R: An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase'

# An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase'

## Documentation for package ‘phyext2’ version 0.0.4

- DESCRIPTION file
- Package NEWS

## Help Pages

addSubNode | Misc. functions from phyext package
as | Misc. functions from phyext package (class definitions)
as-method | Misc. functions from phyext package (class definitions)
coerce-method | Misc. functions from phyext package (class definitions)
coerce-methods | Misc. functions from phyext package (class definitions)
collapse.singletons | Misc. functions from phyext package
collapse.subnodes | Misc. functions from phyext package
collapse.to.singles | Misc. functions from phyext package
contData | Misc. functions from phyext package
deep.phy.copy | Misc. functions from phyext package
discData | Misc. functions from phyext package
expand.singles | Misc. functions from phyext package
get.nexus.comments | Misc. functions from phyext package
get.nodenames | Misc. functions from phyext package
get.tree.weights | Misc. functions from phyext package
getEmptyDataFrame | Misc. functions from phyext package
getSubNodeData | Misc. functions from phyext package
getSubNodeEdgeInds | Misc. functions from phyext package
getSubNodePosish | Misc. functions from phyext package
guess.datatype | Misc. functions from phyext package
has.block | Misc. functions from phyext package
has.characters2 | Misc. functions from phyext package
has.weights | Misc. functions from phyext package
hasData | Misc. functions from phyext package (methods definitions)
hasData-method | Misc. functions from phyext package (methods definitions)
hasData-methods | Misc. functions from phyext package (methods definitions)
hasDataColumn | Misc. functions from phyext package (methods definitions)
hasDataColumn-method | Misc. functions from phyext package (methods definitions)
hasDataColumn-methods | Misc. functions from phyext package (methods definitions)
hasSubNodes | Misc. functions from phyext package (methods definitions)
hasSubNodes-method | Misc. functions from phyext package (methods definitions)
hasSubNodes-methods | Misc. functions from phyext package (methods definitions)
hasWeight | Misc. functions from phyext package (class definitions)
hasWeight-method | Misc. functions from phyext package (class definitions)
is.simmap | Misc. functions from phyext package
match.order | Misc. functions from phyext package
newlabels.v15 | Misc. functions from phyext package
newlabels.v1x | Misc. functions from phyext package
noneData | Misc. functions from phyext package
nSubNodes | Misc. functions from phyext package
phyext | Misc. functions from phyext package (methods definitions)
phyext-method | Misc. functions from phyext package (methods definitions)
phyext-methods | Misc. functions from phyext package (methods definitions)
phyextPlot | Misc. functions from phyext package
phylo4d_ext-class | Misc. functions from phyext package (class definitions)
plot-method | Misc. functions from phyext package (class definitions)
read.characters2 | Misc. functions from phyext package
read.nexus.block | Misc. functions from phyext package
read.nexus.simmap | Misc. functions from phyext package
read.simmap | Misc. functions from phyext package
read.simmap.new | Misc. functions from phyext package
rmdata | Misc. functions from phyext package (methods definitions)
rmdata-method | Misc. functions from phyext package (methods definitions)
rmdata-methods | Misc. functions from phyext package (methods definitions)
show-method | Misc. functions from phyext package (class definitions)
showSubNodes | Misc. functions from phyext package
snbranch | Misc. functions from phyext package (class definitions)
snbranch-method | Misc. functions from phyext package (class definitions)
sndata | Misc. functions from phyext package (class definitions)
sndata-method | Misc. functions from phyext package (class definitions)
sndata<- | Misc. functions from phyext package (class definitions)
sndata<--method | Misc. functions from phyext package (class definitions)
snid | Misc. functions from phyext package (class definitions)
snid-method | Misc. functions from phyext package (class definitions)
snposition | Misc. functions from phyext package (class definitions)
snposition-method | Misc. functions from phyext package (class definitions)
strip | Misc. functions from phyext package
tipdate.ci | Misc. functions from phyext package
treeHeight | Misc. functions from phyext package (methods definitions)
treeHeight-method | Misc. functions from phyext package (methods definitions)
treeHeight-methods | Misc. functions from phyext package (methods definitions)
validPhylo4d_ext | Misc. functions from phyext package
weight | Misc. functions from phyext package (class definitions)
weight-method | Misc. functions from phyext package (class definitions)
weight<- | Misc. functions from phyext package (class definitions)
weight<--method | Misc. functions from phyext package (class definitions)
write.characters2 | Misc. functions from phyext package
write.nexus.simmap | Misc. functions from phyext package
write.simmap | Misc. functions from phyext package
write.simmap.new | Misc. functions from phyext package
write.simmap.old | Misc. functions from phyext package