R: Pathways Longitudinal and Differential Analysis in Metabolomics

# Pathways Longitudinal and Differential Analysis in Metabolomics

## Documentation for package ‘phoenics’ version 0.6

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

adjust_pval | Class pathwayRes
adjust_pval.pathwayRes | Class pathwayRes
design | Dataset "MTBLS422"
extract | Class pathwayRes
extract.pathwayRes | Class pathwayRes
from_ASICS_to_PHOENICS | Prepare quantification data from ASICS outputs
head.pathwayRes | Class pathwayRes
MTBLS422 | Dataset "MTBLS422"
overlap_coefficient | Calculate overlap coefficient between pathways
pathwayRes | Class pathwayRes
pathways | Dataset "MTBLS422"
pathway_search | Query KEGG pathways for a given set of metabolites
plot.pathwayRes | Class pathwayRes
print.pathwayRes | Class pathwayRes
quantif | Dataset "MTBLS422"
summary.pathwayRes | Class pathwayRes
test_pathway | Pathway differential analysis based on longitudinal metabolomics data