Package: phoenics
Type: Package
Title: Pathways Longitudinal and Differential Analysis in Metabolomics
Version: 0.6
Date: 2025-08-19
Depends: R (>= 4.0.0)
Imports: lme4, blme, tibble, FactoMineR, factoextra, tidyr, stats
Suggests: knitr, KEGGREST
Authors@R: c(person("Camille", "Guilmineau", role = "aut", 
                    email = "camille.guilmineau@inrae.fr"),
             person("Remi", "Servien", role = c("aut", "cre"),
                    email = "remi.servien@inrae.fr",
                    comment = c(ORCID = "0000-0003-1270-1843")),
             person("Nathalie", "Vialaneix", role = "aut", 
                    email = "nathalie.vialaneix@inrae.fr",
                    comment = c(ORCID = "0000-0003-1156-0639")))
Maintainer: Remi Servien <remi.servien@inrae.fr>
Description: Perform a differential analysis at pathway level based on 
             metabolite quantifications and information on pathway metabolite 
             composition. The method, described in Guilmineau et al (2025)
             <doi:10.1186/s12859-025-06118-z> is based on a Principal Component 
             Analysis step and on a linear mixed model.
  Automatic query of metabolic pathways is also implemented. 
License: GPL-3
Repository: CRAN
BugReports: https://forge.inrae.fr/panoramics/phoenics/-/issues
Encoding: UTF-8
NeedsCompilation: no
URL: https://forge.inrae.fr/panoramics/phoenics
LazyData: true
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Language: en-US
Packaged: 2025-08-19 07:25:43 UTC; rservien
Author: Camille Guilmineau [aut],
  Remi Servien [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1270-1843>),
  Nathalie Vialaneix [aut] (ORCID:
    <https://orcid.org/0000-0003-1156-0639>)
Date/Publication: 2025-08-19 08:40:08 UTC
Built: R 4.6.0; ; 2026-04-25 14:14:22 UTC; unix
