BeckFit                 Fit a double logistic equation to a time series
                        according to Beck et al. (2006)
CutSeason               Cut time series by visual estimation
DrawMULTIROI            Draw a Region of Interest
ElmoreFit               Fit a double logistic equation to a time series
                        according to Elmore et al. (2012)
FitDoubleLogBeck        A fit
FitDoubleLogElmore      A fit
FitDoubleLogGu          Fit a double logistic equation to a vector
                        according to Gu et al. (2003)
FitDoubleLogKlHeavy     Fit a double logistic function to a vector
                        according to Klosterman et al. (2014)
FitDoubleLogKlLight     Fit a double logistic equation to a vector
                        according to Klosterman et al. (2014)
GuFit                   Fit a double logistic equation to a time series
                        according to Gu et al. (2003)
KlostermanFit           Fit a double logistic equation to a vector
                        according to Klosterman et al. (2014)
NDVI                    Compute NDVI from Phenocam color indices
PasteSeason             A plotting facility for seasonal data with
                        multiple cycles
PhenoBP                 Extract breakpoints on a time series
PhenoDeriv              Extract phenophases from a fitted equation with
                        method Derivatives
PhenoExtract            Generic function for the extraction of
                        phenological thresholds
PhenoGu                 Extract phenophases from a fitted equation
                        according to Gu et al. 2009
PhenoKl                 Extract phenophases from a fitted equation
                        according to Klosterman et al. 2014
PhenoPlot               A plotting function for phenological thresholds
PhenoTrs                A phenophase method based on fixed thresholds
PrintROI                Print an already drawn region of interest
SplineFit               A function to fit a smoothed spline to
                        Phenological Data
autoFilter              A multiple-approach filtering procedure
bartlett2009            Bartlett 2009 raw data
bartlett2009.filtered   Bartlett 2009 dataset filtered
bartlett2009.fitted     Bartlett 2009 dataset with computed fitting and
                        uncertainty estimation
bartlett2009.processed
                        Bartlett 2009 dataset processed by greenExplore
                        function
combineUncertainty      An evolution of 'greenProcess' for the
                        combination of uncertainty after processing
convert                 Convert in data.frame a 'zoo' or 'ts' object
convertROI              Convert a region of interest object from the
                        old structure to the new (phenopix > 2.4)
editExposure            Change erroneous exposure values by hand
extract                 Extract items from an object of class phenopix
extractDateFilename     Estract dates from filenames
extractParameters       Extract fitting parameters from a pixel-based
                        analysis
extractVIs              Extracts various vegetation indexes in a ROI
fitted.phenopix         Returns predicted values from 'phenopix'
                        objects.
get.options             Returns default options for function
                        'autoFilter'.
getCoords               Extract coordinates (in pixels) of the exposure
                        string from a given JPEG image
getExposure             Extract exposure from stardot (or similar)
                        images
greenClusters           Performs a cluster analysis on data in output
                        from pixel-based phenology
greenExplore            Explore all possible fitting and theshold
                        methods from the package phenopix
greenProcess            Fit a curve and extract thresholds from
                        vegetation index time series
hydrodoy                Converts from and to hydrological day of year
matchExposure           Match exposures retrieved from the header of
                        (stardot) digital images
phenopix-package        A package for the processing of images of a
                        vegetation cover
plot.phenopix           Plotting 'phenopix' objects.
plotBP                  A function to plot results of function
                        'PhenoBP'
plotExplore             Plot an object in output from the greenExplore
                        function
plotSpatial             Plot pixel-based analysis results from
                        spatialGreen and extractParameters functions
plotSum                 A plotting facility to show the combination of
                        uncertainty
plotVI                  Plot RGB DN, RGB indices and brightness
print.phenopix          Print 'phenopix' objects.
resizeImage             Resize an image (and a tROI) to a given pixel
                        resolution
spatialFilter           Explore all possible fitting and theshold
                        methods from the package phenopix
spatialGreen            Process pixel-based greenness indexes
splitROI                Splits a ROI into multiple subrois for spatial
                        analysis
structureFolder         Fast structuration of a folder for phenopix
                        process
summarizePhases         An evolution of 'greenProcess' for the
                        combination of uncertainty after processing
summary.phenopix        Summary of 'phenopix' objects.
trainOCR                Extract a training dataset for OCR procedure
update.phenopix         Update 'phenopix' objects.
updateROI               Update pixels included in a ROI of different
                        pixel size
