R: Analyse Biological Time-Series Data

# Analyse Biological Time-Series Data

## Documentation for package ‘phase’ version 1.2.9

- DESCRIPTION file

## Help Pages

allActograms | Generate actograms
allPeriodogramsAct | Periodogram analysis for activity data
allPeriodogramsSleep | Periodogram analysis for sleep data
allSomnograms | Generate actograms for sleep data (Somnograms)
anticipationAct | Compute anticipation for activity data
binData | Bin activity data to desired intervals
CoM | Objectively quantify and visualise phases and calculate consolidation in pre-defined time-windows
df | Example DAM data
indActogram | Plot actogram of individual fly
indPeriodogramAct | Periodogram plot for activity data of individual flies
indPeriodogramSleep | Periodogram plot for sleep data of individual flies
indSomnogram | Generate actograms for sleep data (Somnograms) for individual flies
peakIdentifier | Phase identifier for activity data
profilesAct | Compute and plot activity profiles
profilesSleep | Compute and plot sleep profiles
rosePlotsAct | Generate rose plots for averaged activity data
rosePlotsSleep | Generate rose plots for averaged sleep data
sleepData | Equivalent of binData() but for sleep data
sleepOnsetBoutLength | Computes, tabulates and plots day-time and night-time onset of sleep bouts and their respective lengths
sleepStages | Plot sleep stages in individual flies
sleepStat | Computes and tabulates day-time and night-time sleep statistics
transitionProbs | Plot and generate data for transition frequencies between sleep stages
trimData | Trim data for downstream analyses