2025-08-27	Version 1.2-5

* Updated help-file entries so that they linked to package entries in
  a way compatible with CRAN's new requirements.
* Updated CITATION and DESCRIPTION files for new author list
  requirements.

2020-08-31	Version 1.2-4

* Removed '$' from entries in help files following updates to how R
  processes equations in help-file entries in R >=4.2.

2021-06-14	Version 1.2-3

* PGLMM vignette generates a warning (sometimes) under Linux; used set.seed
  to remove uncertainty

2020-10-12	Version 1.2-2

* Removed apTreeshape as dependency (and so Colless' index) at CRAN's request

2020-07-26	Version 1.2-1

* DESCRIPTION - formatR added to suggests for vignettes (at CRAN's request)
* shape.R - is.binary.tree --> is.binary (at ape's request)

2019-02-26	Version 1.2-0

* assemblage.phylogenies - bug in species dropping (affecting IAC and
  PAE); hat-tip to Carlos Alberto Arnillas
* pez-pglmm-overview - minor (but very important!) correction to site
  and species factor creation (hat-tip to Andrew Tanentzap)
* removed .Random.seed object in laja data
* added congeneric.impute; fixed regular expression issues in
  congeneric.merge - hat-tip to Josep Padulles Cubino

2016-01-15	Version 1.1-1

* eco.scape.R & scape.R - changed return type, stopped crashing bug on
  certain parameter combinations (hat-tip to Ben Weinstein)
* metrics.R - more descriptive documentation for .pd (hat-tip to Max
  Farrell), IMPORTANT change to calculation of .scheiner
* CITATION - updated now manuscript released
* pez-pglmm-overview - new overview vignette
* pglmm.R - corrected mis-specified documentation/code

2015-07-29	Version 1.1-0

* metric.null.R - added generic metrics, metric null distributions,
  and changed wrapper naming
* scale.R - changed return values
* CITATION - added citation file

2015-02-10	Version 1.0-0

* pglmm.R - created, examples added to vignette
* comparative.comm.R - added wrappers 
* shape.R - removed PVR package dependency
