R: Reading Portable Encapsulated Projects

# Reading Portable Encapsulated Projects

## Documentation for package ‘pepr’ version 0.6.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

pepr-package | pepr
$-method | Access '"Config"' object elements
activateAmendments | Activate amendments in objects of '"Project"'
activateAmendments-method | Activate amendments in objects of '"Project"'
checkSection | Check for existence of a section in the Project config
checkSection-method | Check for existence of a section in the Project config
Config | Config objects and specialized list obejcts and expand string attributes
config | Extract '"Project"'
Config-class | Config objects and specialized list obejcts and expand string attributes
config-method | Extract '"Project"'
fetchSamples | Collect samples fulfilling the specified requirements
getSample | Extract samples
getSample-method | Extract samples
getSubsample | Extract subsamples
getSubsample-method | Extract subsamples
listAmendments | List amendments
listAmendments-method | List amendments
makeSectionsAbsolute | Make selected sections absolute using config path
makeSectionsAbsolute-method | Make selected sections absolute using config path
pepr | pepr
Project | The constructor of a class representing a Portable Encapsulated Project
Project-class | Portable Encapsulated Project object
pullProject | Pull a PEP from PEPhub API
sampleTable | View samples in the objects of '"Project"'
sampleTable-method | View samples in the objects of '"Project"'
saveJWT | Save or update JWT
saveProject | Save a modified PEP Project to a local directory
select-config | Access '"Config"' object elements
[-method | Access '"Config"' object elements
[[-method | Access '"Config"' object elements