Package: pegas
Version: 1.4
Date: 2025-12-08
Title: Population and Evolutionary Genetics Analysis System
Authors@R: c(person("Emmanuel", "Paradis", role = c("aut", "cre", "cph"), email = "Emmanuel.Paradis@ird.fr", comment = c(ORCID = "0000-0003-3092-2199")),
  person("Thibaut", "Jombart", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-2226-8692")),
  person("Zhian N.", "Kamvar", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-1458-7108")),
  person("Brian", "Knaus", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-1665-4343")),
  person("Klaus", "Schliep", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-2941-0161")),
  person("Alastair", "Potts", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-0919-7279")),
  person("David", "Winter", role = c("aut", "cph"), comment = c(ORCID = "0000-0002-6165-0029")))
Depends: R (>= 3.2.0), ape (>= 5.3-11)
Imports: graphics, utils, methods
Suggests: rgl, snpStats, adegenet
ZipData: no
Description: Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
License: GPL (>= 2)
URL: https://emmanuelparadis.github.io/pegas.html
NeedsCompilation: yes
Packaged: 2025-12-08 06:57:09 UTC; paradis
Author: Emmanuel Paradis [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-3092-2199>),
  Thibaut Jombart [aut, cph] (ORCID:
    <https://orcid.org/0000-0003-2226-8692>),
  Zhian N. Kamvar [aut, cph] (ORCID:
    <https://orcid.org/0000-0003-1458-7108>),
  Brian Knaus [aut, cph] (ORCID: <https://orcid.org/0000-0003-1665-4343>),
  Klaus Schliep [aut, cph] (ORCID:
    <https://orcid.org/0000-0003-2941-0161>),
  Alastair Potts [aut, cph] (ORCID:
    <https://orcid.org/0000-0003-0919-7279>),
  David Winter [aut, cph] (ORCID:
    <https://orcid.org/0000-0002-6165-0029>)
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Repository: CRAN
Date/Publication: 2025-12-08 08:10:02 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-26 00:20:51 UTC; unix
Archs: pegas.so.dSYM
