Package: pcmabc
Type: Package
Title: Approximate Bayesian Computations for Phylogenetic Comparative
        Methods
Version: 1.1.3
Date: 2022-05-06
Author: Krzysztof Bartoszek <krzbar@protonmail.ch>, Pietro Lio'
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Description: Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <doi:10.5506/APhysPolBSupp.12.25>. The suggested geiger package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/geiger/>, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/distory/>, suggested to take latest version. 
Depends: R(>= 2.9.1)
Imports: ape (>= 3.0.6), graphics, methods, mvSLOUCH, phangorn, stats,
        utils, yuima
Suggests: geiger, distory
License: GPL (>= 2) | file LICENCE
LazyLoad: yes
Collate: ABCdist.R ABCmessage.R ABC.R ABCupdate.R draw.R
        from_geiger_2_0_6_2_diversification.R getTipSample.R rates.R
        simsde.R simtree.R
NeedsCompilation: no
Repository: CRAN
Packaged: 2022-05-06 11:13:48 UTC; kbart
Date/Publication: 2022-05-09 08:40:07 UTC
Built: R 4.6.0; ; 2026-04-26 14:25:50 UTC; unix
