Package: pastboon
Type: Package
Title: Simulation of Parameterized Stochastic Boolean Networks
Version: 0.1.4
Description: A Boolean network is a particular kind of discrete dynamical system where the variables are simple binary switches. Despite its simplicity, Boolean network modeling has been a successful method to describe the behavioral pattern of various phenomena. Applying stochastic noise to Boolean networks is a useful approach for representing the effects of various perturbing stimuli on complex systems. A number of methods have been developed to control noise effects on Boolean networks using parameters integrated into the update rules. This package provides functions to examine three such methods: Boolean network with perturbations (BNp), described by Trairatphisan et al. (2013) <doi:10.1186/1478-811X-11-46>, stochastic discrete dynamical systems (SDDS), proposed by Murrugarra et al. (2012) <doi:10.1186/1687-4153-2012-5>, and Boolean network with probabilistic edge weights (PEW), presented by Deritei et al. (2022) <doi:10.1371/journal.pcbi.1010536>. This package includes source code derived from the 'BoolNet' package, which is licensed under the Artistic License 2.0.
Authors@R: c(person("Mohammad", "Taheri-Ledari", role = c("aut", "cre","cph"), email = "mo.taheri@ut.ac.ir", comment = c(ORCID = "0009-0007-9132-077X")),
    person("Kaveh", "Kavousi", role = "ctb", email = "kkavousi@ut.ac.ir", comment = c(ORCID = "0000-0002-1906-3912")),
    person("Sayed-Amir", "Marashi", role = "ctb", email = "marashi@ut.ac.ir", comment = c(ORCID = "0000-0001-9801-7449")),
    person(given = "Authors of BoolNet", role = "ctb", comment = "Original authors of the BoolNet package"),
    person(c("Troy", "D."), "Hanson", role = "ctb", comment="Contributed uthash macros"))
Author: Mohammad Taheri-Ledari [aut, cre, cph]
    (<https://orcid.org/0009-0007-9132-077X>),
  Kaveh Kavousi [ctb] (<https://orcid.org/0000-0002-1906-3912>),
  Sayed-Amir Marashi [ctb] (<https://orcid.org/0000-0001-9801-7449>),
  Authors of BoolNet [ctb] (Original authors of the BoolNet package),
  Troy D. Hanson [ctb] (Contributed uthash macros)
Maintainer: Mohammad Taheri-Ledari <mo.taheri@ut.ac.ir>
Depends: R (>= 3.5.0)
Suggests: BoolNet
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
BugReports: https://github.com/taherimo/pastboon/issues
Packaged: 2025-01-24 18:56:30 UTC; taheri
Repository: CRAN
Date/Publication: 2025-01-24 19:10:06 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-25 21:03:57 UTC; unix
Archs: pastboon.so.dSYM
