R: Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

# Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

## Documentation for package ‘parseRPDR’ version 1.1.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

all_ids_mi2b2 | Legacy function to create a vector of all possible IDs for mi2b2 workbench
convert_dia | Searches diagnosis columns for given diseases.
convert_enc | Searches columns for given diseases defined by ICD codes.
convert_lab | Converts lab results to normal/abnormal based-on reference values.
convert_med | Adds boolean columns corresponding to a group of medications whether it is present in the given row.
convert_notes | Extracts information from notes free text.
convert_phy | Searches health history data for given codes
convert_prc | Searches procedures columns for given procedures.
convert_rfv | Searches columns for given reason for visit defined by ERFV codes.
create_img_db | Create a database of DICOM headers.
export_notes | Exports free text notes to individual text files.
find_exam | Find exam data within a given timeframe using parallel CPU computing.
load_all | Loads allergy data information into R.
load_all_data | Loads all RPDR text outputs into R.
load_bib | Loads BiobankFile data into R.
load_con | Loads contact information into R.
load_dem | Loads demographic information into R for new demographic tables following changes in the beginning of 2022.
load_dem_old | Loads demographic information into R for demographics tables before 2022.
load_dia | Loads diagnoses into R.
load_enc | Loads encounter information into R.
load_lab | Loads laboratory results into R.
load_lno | Loads LMR note documents into R.
load_mcm | Loads match control data into R.
load_med | Loads medication order detail into R.
load_mic | Loads microbiology results into R.
load_mrn | Loads MRN data into R.
load_notes | Loads note documents into R.
load_phy | Loads helath history information into R.
load_prc | Loads procedures into R.
load_prv | Loads providers information into R.
load_ptd | Loads patient data information into R.
load_rdt | Loads radiology procedures data into R.
load_rfv | Loads reason for visit data into R.
load_trn | Loads transfusion results into R.
pretty_mrn | Converts MRN integer to string compatible with RPDR.
pretty_numbers | Converts numerical codes to universal format specified by length.
pretty_text | Removes spaces, special characters and capitals from string vector.
remove_column | Delete columns with all NA or all identical data.