paramlink-package	paramlink-package
addDaughter	pedModify
addMarker	markers
addOffspring	pedModify
addParents	pedModify
addSon	pedModify
allGenotypes	allGenotypes
ancestors	pedParts
as.data.frame.linkdat	as.data.frame.linkdat
as.data.frame.linkres	linkres
as.matrix.linkdat	as.matrix.linkdat
branch	pedModify
breakLoops	pedigreeLoops
connectedComponents	Familias2linkdat
cousinPed	pedCreate
cousins	pedParts
cousinsPed	pedCreate
descendants	pedParts
dominant	dominant
doubleCousins	pedCreate
doubleFirstCousins	pedCreate
examineKinships	examineKinships
exclusionPower	exclusionPower
Familias2linkdat	Familias2linkdat
fast.grid	allGenotypes
findLoopBreakers	pedigreeLoops
findLoopBreakers2	pedigreeLoops
fullSibMating	pedCreate
geno.grid.subset	allGenotypes
getMarkers	markers
grandparents	pedParts
halfCousinPed	pedCreate
halfCousinsPed	pedCreate
halfSibStack	pedCreate
hasCA	hasCA
IBDestimate	IBDestimate
IBDtriangle	IBDtriangle
inbreeding	relatednessCoeff
is.linkdat	is.linkdat
is.linkdat.list	is.linkdat
is.singleton	is.linkdat
jacquard	relatednessCoeff
jacquard2	relatednessCoeff
kinship_coefs	relatednessCoeff
leaves	pedParts
likelihood	likelihood
likelihood.linkdat	likelihood
likelihood.list	likelihood
likelihood.singleton	likelihood
likelihood_LINKAGE	likelihood
linkage.power	linkage.power
linkageSim	linkageSim
linkdat	linkdat
linkres	linkres
lod	lod
lod.peaks	lod.peaks
LR	LR
marker	markers
markers	markers
markerSim	markerSim
mendelianCheck	mendelianCheck
mergePed	mergePed
merlin	merlin
merlinUnlikely	merlin
modifyMarker	markers
modifyMarkerMatrix	markers
nephews_nieces	pedParts
nuclearPed	pedCreate
offspring	pedParts
oneMarkerDistribution	oneMarkerDistribution
paramlink	paramlink-package
parents	pedParts
peakSummary	linkres
pedCreate	pedCreate
pedigreeLoops	pedigreeLoops
pedModify	pedModify
pedParts	pedParts
plot.linkdat	plot.linkdat
plot.linkres	linkres
plot.singleton	plot.linkdat
plotPedList	plotPedList
print.linkdat	linkdat
print.linkdat.model	setModel
print.linkres	linkres
quadHalfFirstCousins	pedCreate
randomPed	randomPed
readDatfile	readDatfile
readFamiliasLoci	Familias2linkdat
relabel	pedModify
related.pairs	pedParts
relatednessCoeff	relatednessCoeff
relationLR	relationLR
removeIndividuals	pedModify
removeMarkers	markers
restore_linkdat	as.matrix.linkdat
setAvailable	setAvailable
setMarkers	markers
setModel	setModel
setPlotLabels	setPlotLabels
showInTriangle	showInTriangle
siblings	pedParts
simpleSim	simpleSim
singleton	linkdat
spouses	pedParts
subset.linkdat	linkdat
summary.linkdat	linkdat
summary.linkres	linkres
summary.powres	linkage.power
swapAff	pedModify
swapAvailable	setAvailable
swapGenotypes	markers
swapSex	pedModify
tieLoops	pedigreeLoops
toyped	toyped
transferMarkerdata	transferMarkerdata
trim	pedModify
twoloops	twoloops
twoMarkerDistribution	twoMarkerDistribution
unrelated	pedParts
write.linkdat	linkdat
Xped	Xped
