Familias2linkdat        Convert 'Familias' output to linkdat objects
IBDestimate             Relatedness estimation
IBDtriangle             IBD triangle plot
LR                      Likelihood ratios of pedigree hypotheses
Xped                    Example pedigree with X-linked disease pattern.
allGenotypes            Genotype combinations
as.data.frame.linkdat   linkdat to data.frame conversion
as.matrix.linkdat       linkdat to matrix conversion
dominant                Example pedigree for linkage analysis
examineKinships         Check pedigree for relationship errors
exclusionPower          Power of exclusion
hasCA                   Pairwise common ancestors
is.linkdat              Is an object a linkdat object?
likelihood              Pedigree likelihood
linkage.power           Power of a linkage study
linkageSim              Simulate markers linked to a disease locus.
linkdat                 Linkdat objects
linkres                 S3 methods for class 'linkres'.
lod                     Two-point LOD score
lod.peaks               LOD score peaks
markerSim               Marker simulation
markers                 Marker functions
mendelianCheck          Check for Mendelian errors
mergePed                Merge two pedigrees
merlin                  MERLIN wrappers
oneMarkerDistribution   Genotype probability distribution
pedCreate               Create simple pedigrees
pedModify               Modify the pedigree of 'linkdat' objects
pedParts                Pedigree subsets
pedigreeLoops           Pedigree loops
plot.linkdat            Plot pedigrees with genotypes
plotPedList             Plot a list of pedigrees.
randomPed               Random pedigree
readDatfile             Read dat file in LINKAGE format
relatednessCoeff        Relatedness coefficients
relationLR              Relationship Likelihood Ratio
setAvailable            Functions for modifying availability vectors
setModel                Set, change or display the model parameters for
                        'linkdat' objects
setPlotLabels           Attach plot labels to a linkdat object
showInTriangle          Add points to the IBD triangle
simpleSim               Unconditional marker simulation
toyped                  Toy pedigree for linkage analysis
transferMarkerdata      Transfer marker data
twoMarkerDistribution   Genotype probability distribution
twoloops                A consanguineous pedigree
