# Generated by roxygen2: do not edit by hand

S3method("parLower<-",constrained)
S3method("parLower<-",paleotreeFunc)
S3method("parUpper<-",constrained)
S3method("parUpper<-",paleotreeFunc)
S3method("parbounds<-",constrained)
S3method("parbounds<-",paleotreeFunc)
S3method("parnames<-",constrained)
S3method("parnames<-",paleotreeFunc)
S3method(parInit,constrained)
S3method(parInit,paleotreeFunc)
S3method(parLower,constrained)
S3method(parLower,paleotreeFunc)
S3method(parUpper,constrained)
S3method(parUpper,paleotreeFunc)
S3method(parbounds,constrained)
S3method(parbounds,paleotreeFunc)
S3method(parnames,constrained)
S3method(parnames,paleotreeFunc)
export("parLower<-")
export("parUpper<-")
export("parbounds<-")
export("parnames<-")
export(HurlbertPIE)
export(accioBestAcquisitionModel)
export(accioExhaustionCurve)
export(addTermBranchLength)
export(ancPropStateMat)
export(binTimeData)
export(bin_cal3TimePaleoPhy)
export(bin_timePaleoPhy)
export(bindPaleoTip)
export(branchClasses)
export(cal3TimePaleoPhy)
export(charExhaustPlot)
export(cladogeneticTraitCont)
export(cleanNewPhylo)
export(collapseNodes)
export(compareNodeAges)
export(compareTermBranches)
export(constrainParPaleo)
export(createMrBayesConstraints)
export(createMrBayesTipCalibrations)
export(createMrBayesTipDatingNexus)
export(dateNodes)
export(dateTaxonTreePBDB)
export(deadTree)
export(degradeTree)
export(depthRainbow)
export(divCurveFossilRecordSim)
export(dropExtant)
export(dropExtinct)
export(dropPaleoTip)
export(dropZLB)
export(equation2function)
export(expandTaxonTree)
export(fixRootTime)
export(footeValues)
export(fossilRecord2fossilRanges)
export(fossilRecord2fossilTaxa)
export(fossilTaxa2fossilRecord)
export(fourDate2timeList)
export(freqRat)
export(getCladeTaxaPBDB)
export(getPBDBocc)
export(getSpecificTaxaPBDB)
export(horizonSampRate)
export(makePBDBtaxonTree)
export(make_durationFreqCont)
export(make_durationFreqDisc)
export(make_inverseSurv)
export(minBranchLength)
export(minCharChange)
export(multiDiv)
export(nearestNeighborDist)
export(nodeDates2branchLengths)
export(obtainDatedPosteriorTreesMrB)
export(occData2timeList)
export(optimPaleo)
export(pairwiseSpearmanRho)
export(parInit)
export(parLower)
export(parUpper)
export(parbounds)
export(parentChild2taxonTree)
export(parnames)
export(perCapitaRates)
export(perfectParsCharTree)
export(phyloDiv)
export(plotMultiDiv)
export(plotOccData)
export(plotPhyloPicTree)
export(plotTaxaTreePBDB)
export(plotTraitgram)
export(pqr2Ps)
export(pqsRate2sProb)
export(probAnc)
export(qsProb2Comp)
export(qsRate2Comp)
export(resolveTreeChar)
export(reverseList)
export(rootSplit)
export(sProb2sRate)
export(sRate2sProb)
export(sampleRanges)
export(seqTimeList)
export(setRootAge)
export(setRootAges)
export(simFossilRecord)
export(simTermTaxa)
export(simTermTaxaAdvanced)
export(taxa2cladogram)
export(taxa2phylo)
export(taxicDivCont)
export(taxicDivDisc)
export(taxonSortPBDBocc)
export(taxonTable2taxonTree)
export(testEdgeMat)
export(timeLadderTree)
export(timeList2fourDate)
export(timePaleoPhy)
export(timeSliceFossilRecord)
export(timeSliceTree)
export(tipDatingCompatabilitySummaryMrB)
export(treeContradiction)
export(trueTermTaxaTree)
export(twoWayEcologyCluster)
export(unitLengthTree)
import(ape)
import(stats)
importFrom(RCurl,getURLContent)
importFrom(grDevices,col2rgb)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.size)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,axTicks)
importFrom(graphics,axis)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rasterImage)
importFrom(graphics,rect)
importFrom(graphics,title)
importFrom(jsonlite,fromJSON)
importFrom(methods,is)
importFrom(phangorn,Ancestors)
importFrom(phangorn,Descendants)
importFrom(phangorn,ancestral.pars)
importFrom(phangorn,maxCladeCred)
importFrom(phangorn,phyDat)
importFrom(phytools,bind.tip)
importFrom(png,readPNG)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,type.convert)
