R: Display and Analyze ROC Curves

# Display and Analyze ROC Curves

## Documentation for package ‘pROC’ version 1.19.0.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

A C G H L M O P R S V

pROC-package | pROC

## -- A --

are.paired | Are two ROC curves paired?
are.paired.auc | Are two ROC curves paired?
are.paired.roc | Are two ROC curves paired?
are.paired.smooth.roc | Are two ROC curves paired?
aSAH | Subarachnoid hemorrhage data
auc | Compute the area under the ROC curve
auc.default | Compute the area under the ROC curve
auc.formula | Compute the area under the ROC curve
auc.multiclass.roc | Compute the area under the ROC curve
auc.roc | Compute the area under the ROC curve
auc.smooth.roc | Compute the area under the ROC curve

## -- C --

ci | Compute the confidence interval of a ROC curve
ci.auc | Compute the confidence interval of the AUC
ci.auc.auc | Compute the confidence interval of the AUC
ci.auc.default | Compute the confidence interval of the AUC
ci.auc.formula | Compute the confidence interval of the AUC
ci.auc.multiclass.auc | Compute the confidence interval of the AUC
ci.auc.multiclass.roc | Compute the confidence interval of the AUC
ci.auc.roc | Compute the confidence interval of the AUC
ci.auc.smooth.roc | Compute the confidence interval of the AUC
ci.coords | Compute the confidence interval of arbitrary coordinates
ci.coords.default | Compute the confidence interval of arbitrary coordinates
ci.coords.formula | Compute the confidence interval of arbitrary coordinates
ci.coords.roc | Compute the confidence interval of arbitrary coordinates
ci.coords.smooth.roc | Compute the confidence interval of arbitrary coordinates
ci.default | Compute the confidence interval of a ROC curve
ci.formula | Compute the confidence interval of a ROC curve
ci.multiclass.auc | Compute the confidence interval of a ROC curve
ci.multiclass.roc | Compute the confidence interval of a ROC curve
ci.roc | Compute the confidence interval of a ROC curve
ci.se | Compute the confidence interval of sensitivities at given specificities
ci.se.default | Compute the confidence interval of sensitivities at given specificities
ci.se.formula | Compute the confidence interval of sensitivities at given specificities
ci.se.roc | Compute the confidence interval of sensitivities at given specificities
ci.se.smooth.roc | Compute the confidence interval of sensitivities at given specificities
ci.smooth.roc | Compute the confidence interval of a ROC curve
ci.sp | Compute the confidence interval of specificities at given sensitivities
ci.sp.default | Compute the confidence interval of specificities at given sensitivities
ci.sp.formula | Compute the confidence interval of specificities at given sensitivities
ci.sp.roc | Compute the confidence interval of specificities at given sensitivities
ci.sp.smooth.roc | Compute the confidence interval of specificities at given sensitivities
ci.thresholds | Compute the confidence interval of thresholds
ci.thresholds.default | Compute the confidence interval of thresholds
ci.thresholds.formula | Compute the confidence interval of thresholds
ci.thresholds.roc | Compute the confidence interval of thresholds
ci.thresholds.smooth.roc | Compute the confidence interval of thresholds
coords | Coordinates of a ROC curve
coords.auc | Coordinates of a ROC curve
coords.roc | Coordinates of a ROC curve
coords.smooth.roc | Coordinates of a ROC curve
coords_transpose | Transposing the output of 'coords'
cov | Covariance of two paired ROC curves
cov.auc | Covariance of two paired ROC curves
cov.default | Covariance of two paired ROC curves
cov.roc | Covariance of two paired ROC curves
cov.smooth.roc | Covariance of two paired ROC curves

## -- G --

geom_polygon_auc | Add an AUC polygon to a ggroc plot
geom_polygon_auc.auc | Add an AUC polygon to a ggroc plot
geom_polygon_auc.roc | Add an AUC polygon to a ggroc plot
geom_polygon_auc.smooth.roc | Add an AUC polygon to a ggroc plot
ggroc | Plot a ROC curve with ggplot2
ggroc.list | Plot a ROC curve with ggplot2
ggroc.roc | Plot a ROC curve with ggplot2
ggroc.smooth.roc | Plot a ROC curve with ggplot2
groupGeneric | pROC Group Generic Functions
groupGeneric.auc | pROC Group Generic Functions
groupGeneric.ci.coords | pROC Group Generic Functions
groupGeneric.ci.se | pROC Group Generic Functions
groupGeneric.ci.sp | pROC Group Generic Functions
groupGeneric.pROC | pROC Group Generic Functions

## -- H --

has.partial.auc | Does the ROC curve have a partial AUC?
has.partial.auc.auc | Does the ROC curve have a partial AUC?
has.partial.auc.roc | Does the ROC curve have a partial AUC?
has.partial.auc.smooth.roc | Does the ROC curve have a partial AUC?

## -- L --

lines.roc | Add a ROC line to a ROC plot
lines.roc.default | Add a ROC line to a ROC plot
lines.roc.formula | Add a ROC line to a ROC plot
lines.roc.roc | Add a ROC line to a ROC plot
lines.roc.smooth.roc | Add a ROC line to a ROC plot
lines.smooth.roc | Add a ROC line to a ROC plot

## -- M --

Math | pROC Group Generic Functions
Math.auc | pROC Group Generic Functions
Math.ci | pROC Group Generic Functions
Math.ci.auc | pROC Group Generic Functions
Math.ci.coords | pROC Group Generic Functions
Math.ci.se | pROC Group Generic Functions
Math.ci.sp | pROC Group Generic Functions
multiclass.roc | Multi-class AUC
multiclass.roc.default | Multi-class AUC
multiclass.roc.formula | Multi-class AUC

## -- O --

Ops | pROC Group Generic Functions
Ops.auc | pROC Group Generic Functions
Ops.ci | pROC Group Generic Functions
Ops.ci.auc | pROC Group Generic Functions
Ops.ci.coords | pROC Group Generic Functions
Ops.ci.se | pROC Group Generic Functions
Ops.ci.sp | pROC Group Generic Functions

## -- P --

plot | Plot a ROC curve
plot.ci | Plot confidence intervals
plot.ci.coords | Plot confidence intervals
plot.ci.se | Plot confidence intervals
plot.ci.sp | Plot confidence intervals
plot.ci.thresholds | Plot confidence intervals
plot.roc | Plot a ROC curve
plot.roc.default | Plot a ROC curve
plot.roc.formula | Plot a ROC curve
plot.roc.roc | Plot a ROC curve
plot.roc.smooth.roc | Plot a ROC curve
plot.smooth.roc | Plot a ROC curve
power.roc.test | Sample size and power computation for ROC curves
power.roc.test.list | Sample size and power computation for ROC curves
power.roc.test.numeric | Sample size and power computation for ROC curves
power.roc.test.roc | Sample size and power computation for ROC curves
print.auc | Print a ROC curve object
print.ci.auc | Print a ROC curve object
print.ci.coords | Print a ROC curve object
print.ci.se | Print a ROC curve object
print.ci.sp | Print a ROC curve object
print.ci.thresholds | Print a ROC curve object
print.multiclass.auc | Print a ROC curve object
print.multiclass.roc | Print a ROC curve object
print.mv.multiclass.roc | Print a ROC curve object
print.roc | Print a ROC curve object
print.smooth.roc | Print a ROC curve object
pROC | pROC

## -- R --

roc | Build a ROC curve
roc.data.frame | Build a ROC curve
roc.default | Build a ROC curve
roc.formula | Build a ROC curve
roc.test | Compare two ROC curves
roc.test.auc | Compare two ROC curves
roc.test.default | Compare two ROC curves
roc.test.formula | Compare two ROC curves
roc.test.roc | Compare two ROC curves
roc.test.smooth.roc | Compare two ROC curves
roc_ | Build a ROC curve

## -- S --

smooth | Smooth a ROC curve
smooth.default | Smooth a ROC curve
smooth.roc | Smooth a ROC curve
smooth.smooth.roc | Smooth a ROC curve

## -- V --

var | Variance of a ROC curve
var.auc | Variance of a ROC curve
var.default | Variance of a ROC curve
var.roc | Variance of a ROC curve
var.smooth.roc | Variance of a ROC curve