R: Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

# Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

## Documentation for package ‘ouch’ version 2.20

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

ouch-package | Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd | Greater Antillean anolis lizard sexual size dimorphism data
ape2ouch | Phylogenetic tree object in 'ouch' format
as.data.frame.browntree | Coerce an 'ouch' object to a data frame
as.data.frame.hansentree | Coerce an 'ouch' object to a data frame
as.data.frame.ouchtree | Coerce an 'ouch' object to a data frame
as_data_frame | Coerce an 'ouch' object to a data frame
bimac | Anolis bimaculatus lizard size data
bootstrap | Bootstrapping for uncertainty quantification
bootstrap-method | Bootstrapping for uncertainty quantification
brown | Phylogenetic Brownian motion models
browntree-class | Phylogenetic Brownian motion models
coef | Model coefficients
coef-method | Model coefficients
geospiza | Data on Darwin's finches
hansen | Ornstein-Uhlenbeck models of trait evolution
hansentree-class | Ornstein-Uhlenbeck models of trait evolution
logLik | Log likelihood of a fitted model
logLik-method | Log likelihood of a fitted model
ouch | Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
ouch,package | Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
ouchtree | Phylogenetic tree object in 'ouch' format
ouchtree-class | Phylogenetic tree object in 'ouch' format
paint | Painting regimes on a phylogenetic tree
plot | 'ouch' plotting functions
plot-method | 'ouch' plotting functions
simulate | Simulations of a phylogenetic trait model
simulate-method | Simulations of a phylogenetic trait model
summary | Summary methods
summary-method | Summary methods
update | Update and refit an 'ouch' model
update-method | Update and refit an 'ouch' model