Audit Trails            Facilitate the Creation and Modification of
                        Audit Trails
Convert ANALYZE Codes   Convert ANALYZE Codes
Convert NIfTI Codes     Convert NIfTI Codes
afni-class              Class "afni"
anlz                    Constructor for Analyze
anlz-class              Class "anlz"
anlz-nifti-ops          Operations for Objects in the ANALYZE and NIfTI
                        classes
as.anlz                 as.anlz
as.nifti                as.nifti
audit.trail-methods     Extract or Replace NIfTI Audit Trail
aux_file-methods        Extract Image Attribute 'aux_file'
bitpix-methods          Extract Image Attribute 'bitpix'
blend                   Merge Two NIfTI or ANALYZE Volumes
cal_max-methods         Extract Image Attribute 'cal_max'
cal_min-methods         Extract Image Attribute 'cal_min'
cal_units-methods       Extract Image Attribute 'cal_units'
calibrateImage          Set Minimum/Maximum Values for NIfTI data
coerce-methods          Force an Object to Belong to the ANALYZE or
                        NIfTI Class
compressed-methods      Extract Image Attribute 'compressed'
convert.scene           Convert AFNI data codes
data_type-methods       Extract Image Attribute 'data_type'
datatype-methods        Extract Image Attribute 'datatype'
db_name-methods         Extract Image Attribute 'db_name'
descrip-methods         Extract Image Attribute 'descrip'
dim_-methods            Extract Image Attribute 'dim_'
dim_info-methods        Extract Image Attribute 'dim_info'
dim_un0-methods         Extract Image Attribute 'dim_un0'
dropImageDimension      Drop Image Dimension
exp_date-methods        Extract Image Attribute 'exp_date'
exp_time-methods        Extract Image Attribute 'exp_time'
extender-methods        Extract Image Attribute 'extender'
extents-methods         Extract Image Attribute 'extents'
field_skip-methods      Extract Image Attribute 'field_skip'
funused1-methods        Extract Image Attribute 'funused1'
funused2-methods        Extract Image Attribute 'funused2'
funused3-methods        Extract Image Attribute 'funused3'
generated-methods       Extract Image Attribute 'generated'
glmax-methods           Extract Image Attribute 'glmax'
glmin-methods           Extract Image Attribute 'glmin'
hist_un0-methods        Extract Image Attribute 'hist_un0'
hkey_un0-methods        Extract Image Attribute 'hkey_un0'
hotmetal                Hot Metal Color Table
image-methods           Methods for Function 'image'
img_data-methods        Extract Image Attribute '.Data'
img_length              Gets Image Length in Each Dimension
integerTranslation      integerTranslation
intent_code-methods     Extract Image Attribute 'intent_code'
intent_name-methods     Extract Image Attribute 'intent_name'
intent_p1-methods       Extract Image Attribute 'intent_p1'
intent_p2-methods       Extract Image Attribute 'intent_p2'
intent_p3-methods       Extract Image Attribute 'intent_p3'
internalImage-class     "internalImage" class
is.afni                 check object
is.anlz                 check object
is.nifti                check object
magic-methods           Extract Image Attribute 'magic'
nifti                   Constructor for NIfTI
nifti-class             Class "nifti"
nifti-operators         Operations for NIfTI Objects
niftiAuditTrail-class   Class "niftiAuditTrail"
niftiExtension-class    Class "niftiExtension"
niftiExtensionSection-class
                        Class "niftiExtensionSection"
niftiImage-class        "niftiImage" class
nifti_assign-methods    Methods for Function [<- in Package 'base'
nii2oro                 Convert RNifti niftiImage to oro.nifti nifti
                        object
nsli                    Dimension Accessor Functions
omax-methods            Extract Image Attribute 'omax'
omin-methods            Extract Image Attribute 'omin'
onefile                 Creates the 'onefile' Specification for NIfTI
orient-methods          Extract Image Attribute 'orient'
orientation-methods     Extract NIfTI 3D Image Orientation
origin-methods          Extract Image Attribute 'origin'
oro2nii                 Convert oro.nifti nifti to RNifti niftiImage
                        object
orthographic-methods    Methods for Function 'orthographic' in Package
                        'dcemriS4'
overlay-methods         Methods for Function overlay
patient_id-methods      Extract Image Attribute 'patient_id'
performPermutation      Transform array with orthogonal permutation
                        matrix
pixdim-methods          Extract Image Attribute 'pixdim'
qform_code-methods      Extract Image Attribute 'qform_code'
qoffset_x-methods       Extract Image Attribute 'qoffset_x'
qoffset_y-methods       Extract Image Attribute 'qoffset_y'
qoffset_z-methods       Extract Image Attribute 'qoffset_z'
quatern_b-methods       Extract Image Attribute 'quatern_b'
quatern_c-methods       Extract Image Attribute 'quatern_c'
quatern_d-methods       Extract Image Attribute 'quatern_d'
quaternion2rotation     Convert Quaternion into a Rotation Matrix
readAFNI                readAFNI
readANALYZE             readANALYZE
readNIfTI               readNIfTI
regular-methods         Extract Image Attribute 'regular'
reorient                Reorient Image using NIfTI header
resetSlopeIntercept     Change Intercept to 0 and Slope to 1 in NIfTI
                        Object
rmniigz                 Remove File Extensions Around the NIfTI/ANALYZE
                        Formats
scannum-methods         Extract Image Attribute 'scannum'
scl_inter-methods       Extract Image Attribute 'scl_inter'
scl_slope-methods       Extract Image Attribute 'scl_slope'
session_error-methods   Extract Image Attribute 'session_error'
sform_code-methods      Extract Image Attribute 'sform_code'
sizeof_hdr-methods      Extract Image Attribute 'sizeof_hdr'
slice-methods           Methods for Function 'slice'
slice_code-methods      Extract Image Attribute 'slice_code'
slice_duration-methods
                        Extract Image Attribute 'slice_duration'
slice_end-methods       Extract Image Attribute 'slice_end'
slice_overlay-methods   Methods for Function slice_overlay
slice_start-methods     Extract Image Attribute 'slice_start'
smax-methods            Extract Image Attribute 'smax'
smin-methods            Extract Image Attribute 'smin'
srow_x-methods          Extract Image Attribute 'srow_x'
srow_y-methods          Extract Image Attribute 'srow_y'
srow_z-methods          Extract Image Attribute 'srow_z'
start_field-methods     Extract Image Attribute 'start_field'
tim.colors              Tim's Useful Color Table
toffset-methods         Extract Image Attribute 'toffset'
translateCoordinate     Translate Voxel Coordinates
unused1-methods         Extract Image Attribute 'unused1'
verified-methods        Extract Image Attribute 'verified'
views-methods           Extract Image Attribute 'views'
vols_added-methods      Extract Image Attribute 'vols_added'
vox_offset-methods      Extract Image Attribute 'vox_offset'
vox_units-methods       Extract Image Attribute 'vox_units'
voxdim                  Gets Voxel Dimensions
voxres                  Gets Voxel Resolution
writeAFNI-methods       writeAFNI
writeANALYZE-methods    writeANALYZE
writeNIfTI-methods      writeNIfTI
xyzt2space              Bitwise Conversion Subroutines
xyzt_units-methods      Extract Image Attribute 'xyzt_units'
