# Generated by roxygen2: do not edit by hand

S3method(plot,ontology_plot)
S3method(print,ontology_plot)
export(annotation_grid)
export(calibrate_sizes)
export(colour_by_frequency)
export(colour_by_population_frequency)
export(colour_by_term_set)
export(dot_string)
export(get_adjacency_matrix)
export(get_node_friendly_long_names)
export(get_pseudo_adjacency_matrix)
export(get_shortened_names)
export(grid_terms)
export(label_by_frequency)
export(label_by_term_set)
export(long_labels)
export(n_most_frequent_terms)
export(official_labels)
export(onto_plot)
export(p_values_for_occurrence_of_term_in_group)
export(plot_annotation_grid)
export(remove_links)
export(remove_terms_with_less_than_n_occurrences)
export(remove_uninformative_terms)
export(simple_cap)
export(simple_labels)
export(width_by_frequency)
export(width_by_significance)
export(write_dot)
importFrom(Rgraphviz,agopen)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(methods,"slot<-")
importFrom(methods,new)
importFrom(methods,slot)
importFrom(ontologyIndex,get_ancestors)
importFrom(ontologyIndex,minimal_set)
importFrom(paintmap,colour_matrix)
importFrom(paintmap,paintmap)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,pbinom)
importFrom(stats,setNames)
importMethodsFrom(Rgraphviz,plot)
