.augPredIpredModel      Augment Prediction for Ipred Model
.nlmixr0preProcessCovariatesPresent
                        Preprocess Covariates needed (or other data
                        items)
.nlmixrPreprocessLiteralFix
                        This literally fixes parameters in the model
.preProcessDataUi       Preprocess the zero omegas
.preProcessZeroOmega    Preprocess the zero omegas
aaaCranNlmixrThreads    This function is to set the number of threads
                        to 2
addCwres                Add CWRES
addNpde                 NPDE calculation for nlmixr2
addTable                Add table information to nlmixr2 fit object
                        without tables
agqControl              Control options for the agq estimation method
assertNlmixrFit         Assert that this is a nlmixr2 fit object
assertNlmixrFitData     Assert that this is a nlmixr2 fit data object
bobyqaControl           Control for bobyqa estimation method in nlmixr2
boxCox                  Cox Box, Yeo Johnson and inverse transformation
cholSE                  Generalized Cholesky Matrix Decomposition
foControl               Control options for the FO estimation method
foceControl             Control options for the foce estimation method
foceiControl            Control Options for FOCEi
foiControl              Control options foir the FOI estimation method
getValidNlmixrCtl.agq   Get valid nlmixr control object
laplaceControl          Control options for the Laplace estimation
                        method
lbfgsb3cControl         Control for lbfgsb3c estimation method in
                        nlmixr2
n1qn1Control            Control for n1qn1 estimation method in nlmixr2
newuoaControl           Control for newuoa estimation method in nlmixr2
nlmControl              nlmixr2 defaults controls for nlm
nlminbControl           nlmixr2 nlminb defaults
nlmixr2                 nlmixr2 fits population PK and PKPD non-linear
                        mixed effects models.
nlmixr2AllEst           Show all the current estimation methods
nlmixr2AugPredSolve     Augmented Prediction for nlmixr2 fit
nlmixr2CreateOutputFromUi
                        Create nlmixr output from the UI
nlmixr2Est.agq          Generic for nlmixr2 estimation methods
nlmixr2Gill83           Get the optimal forward difference interval by
                        Gill83 method
nlmixr2Hess             Calculate Hessian
nlmixr2Keywords         A list and description of the fields in the
                        nlmxir2 object
nlmixr2Logo             Messages the nlmixr2 logo...
nlmixr2NlmeControl      Control Values for nlme Fit with extra options
                        for nlmixr
nlmixr2Validate         Validate nlmixr2
nlmixr2Version          Display nlmixr2's version
nlmixr2fix              Try to fix a nlmixr2 fit
nlmixrAddObjectiveFunctionDataFrame
                        Add objective function data frame to the
                        current objective function
nlmixrAddTiming         Manually add time to a nlmixr2 object
nlmixrCbind             nlmixrCbind
nlmixrClone             Clone nlmixr environment
nlmixrWithTiming        Time a part of a nlmixr operation and add to
                        nlmixr object
nlsControl              nlmixr2 defaults controls for nls
nmNearPD                C++ implementation of Matrix's nearPD
nmObjGetControl.agq     Get control object from fit
nmObjGetEstimationModel
                        Get the estimation model for a fit object
                        depending on the object type
nmObjGetFoceiControl.agq
                        Method for getting focei compatible control
                        object from nlmixr object
nmObjGetIpredModel      Get the ipred model for a fit object depending
                        on the object type
nmObjGetPredOnly        Get the pred-only model for a fit depending on
                        the object type
nmObjHandleControlObject.agqControl
                        Handle the control object
nmObjHandleModelObject
                        Handle Model Object
nmObjUiSetCompressed    Set if the nlmixr2 object will return a
                        compressed ui
nmsimplex               Nelder-Mead simplex search
ofv                     Return the objective function
optimControl            nlmixr2 optim defaults
posthocControl          Control options for the posthoc estimation
                        method
predict.nlmixr2FitCore
                        Predict method for nlmixr2 fit core objects
print.saemFit           Print an SAEM model fit summary
residuals.nlmixr2FitData
                        Extract residuals from the FOCEI fit
rmEta                   Remove an eta from the model
saemControl             Control Options for SAEM
setCov                  Set the covariance type based on prior
                        calculated covariances
setOfv                  Set/get Objective function type for a nlmixr2
                        object
sqrtm                   Return the square root of general square matrix
                        A
summary.saemFit         Print an SAEM model fit summary
tableControl            Output table/data.frame options
uobyqaControl           Control for uobyqa estimation method in nlmixr2
vpcSim                  VPC simulation
