R: Test for a Neutral Evolutionary Model in Cancer Sequencing Data

# Test for a Neutral Evolutionary Model in Cancer Sequencing Data

## Documentation for package ‘neutralitytestr’ version 0.0.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

lsq_plot | Plot cumulative distribution 'lsq_plot' Plots the cumulative distribution of the data as well as the best fit linear model line.
neutralitytest | Testing for neutrality on cancer sequencing data
neutralitytestr | 'neutralitytestr' package
normalized_plot | Plot normalized cumulative distribution 'normalized_plot' Plots the (normalized) cumulative distribution of the data as well as the theoretical expectation from a neutral evolutionary model.
plot_all | Plot all plots in the package and make composite figure. 'plot_all' Plots histogram, linear model best fit plot and normalized plot and plot and makes composite figure.
VAFneutral | Synthetic sequencing data generated from a evolutionary based cancer simulation.
VAFselection | Synthetic sequencing data generated from a evolutionary based cancer simulation.
vaf_histogram | Plot VAF histogram 'vaf_histogram' Plots a histogram of the variant allele frequencies.