capitalize_first_char   Convert the first character to upper case.
check_alleles           Check the allele names
check_can_create_file   Check that a file can be created at a certain
                        path.
check_fasta_file_sequence_lengths
                        Check the lengths of the sequences in a FASTA
                        file
check_netmhc2pan_bin_url
                        Check the URL of the NetMHCIIpan binary tarball
check_netmhc2pan_data_url
                        Check the URL of the NetMHCIIpan binary tarball
check_netmhc2pan_installation
                        Checks the installation of NetMHCIIpan.
create_temp_fasta_filename
                        Create a '.fasta' file
create_temp_xls_filename
                        Create a '.xls' file
default_params_doc      This function does nothing. It is intended to
                        inherit is parameters' documentation.
download_netmhc2pan_bin
                        Download the NetMHCIIpan binary
get_default_netmhc2pan_bin_path
                        Get the full path to the default NetMHC2pan
                        binary
get_default_netmhc2pan_bin_tarfile_path
                        Get the default path for the NetMHCIIpan binary
                        tarball file
get_default_netmhc2pan_folder
                        Get the path to the folder where this package
                        installs NetMHCIIpan by default
get_default_netmhc2pan_subfolder
                        Get the full path to the NetMHC2pan sub-folder
get_default_netmhc2pan_version
                        Get the default NetMHC2pan version used
get_netmhc2pan_alleles
                        Get a list of the alleles supported by
                        NetMHCIIpan
get_netmhc2pan_archive_filename
                        Get the filename of the NetMHC2pan archive file
get_netmhc2pan_bin_url
                        Get the NetMHCIIpan binary download URL.
get_netmhc2pan_data_url
                        Get the NetMHCIIpan data tarball URL.
get_netmhc2pan_url      Deprecated, use get_netmhc2pan_bin_url instead
install_netmhc2pan      Install NetMHCIIpan
install_netmhc2pan_bin
                        Install the NetMHCIIpan binary to a local
                        folder
install_netmhc2pan_bin_from_file
                        Install the NetMHCIIpan binary to a local
                        folder
install_netmhc2pan_data
                        Install the NetMHCIIpan data to a local folder
install_netmhc2pan_data_from_file
                        Install the NetMHCIIpan data from file
install_netmhc2pan_from_files
                        Install NetMHCIIpan from files.
is_netmhc2pan_bin_installed
                        Measure if NetMHCIIpan binary is installed
                        locally
is_netmhc2pan_data_installed
                        Measure if NetMHCIIpan data folder is installed
                        locally
is_netmhc2pan_haplotype
                        Is the haplotype valid?
is_netmhc2pan_installed
                        Measure if NetMHCIIpan is installed locally
is_netmhc2pan_set_up    Measure if NetMHCIIpan is set up
is_on_appveyor          Determines if the environment is AppVeyor
is_on_ci                Determines if the environment is a continuous
                        integration service
is_on_github_actions    Determines if the environment is GitHub Actions
is_on_travis            Determines if the environment is Travis CI
is_tcsh_installed       See if tcsh is installed
is_url_valid            Is the download URL valid?
netmhc2pan              netmhc2pan: predict peptide binding strengths
                        using NetMHC2pan
netmhc2pan_report       Show a 'netmhc2pan' report using message, to be
                        used when reporting bugs
netmhc2pan_self_test    Test NetMHCIIpan by doing a minimal run.
predict_ic50            Predict the IC50 for peptides.
predict_ic50s           Predict the IC50s from a sequence
read_netmhc2pan_xls_output
                        Read MHC2pan output
run_netmhc2pan          Run NetMHCIIpan
set_up_netmhc2pan       Install the NetMHCIIpan binary to a local
                        folder
to_netmhc2pan_name      Convert a formal haplotype name to its
                        NetMHC2pan notation
uninstall_netmhc2pan    Uninstall NetMHCIIpan
