R: Handle Ambiguity of Protein Identifications from Shotgun Proteomics

# Handle Ambiguity of Protein Identifications from Shotgun Proteomics

## Documentation for package ‘net4pg’ version 0.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

cc_composition | Get peptides and peptide-to-protein mappings for each connected component
cc_stats | Provide statistics on the CCs size
get_adj_matrix | Generate adjacency matrix
get_cc | Generate graph and calculate its connected components
peptide_stats | Calculate percentage of shared vs specific peptides
plot_cc | Plot peptide-to-protein mapping graph
read_inc_matrix | Read incidence matrix of proteomic identifications
reduce_inc_matrix | Reduce size of incidence matrix for downstream analyses
transcriptome_filter | Perform transcriptome-informed post-hoc filtering