R: NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains

# NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains

## Documentation for package ‘nat.templatebrains’ version 1.2.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

add_reglist | Add reglist object describing a bridging/mirroring registration
add_reg_folders | Set or list local folders containing registrations for nat.templatebrains
allreg_dataframe | Make data.frame with details of all registrations
all_templatebrains | Find all template brains or those matching a given image volume
as.character.templatebrain | Template brain methods
as.im3d.templatebrain | Template brain methods
as.templatebrain | Use image file or other object to initialise template brain
as.templatebrain.character | Use image file or other object to initialise template brain
as.templatebrain.im3d | Use image file or other object to initialise template brain
as.templatebrain.templatebrain | Use image file or other object to initialise template brain
boundingbox.templatebrain | Template brain methods
bridging_graph | Make or query connected graph of bridging registrations
bridging_sequence | Find sequence of one or more bridging registrations
dim.templatebrain | Template brain methods
display_slice | Display an image slice in 3D
download_reg_repo | Download and register git repository containing registrations
extra_reg_folders | Set or list local folders containing registrations for nat.templatebrains
FCWB.demo | Sample template brain: FlyCircuit Whole Brain
fit_xform | Fit affine or thin plate spline transform to arbitrary transformation
fit_xform_brain | Fit a single transform to a bridging registration between brains
guess_templatebrain | Find all template brains or those matching a given image volume
is.templatebrain | Template brain methods
local_reg_dir_for_url | Standard local checkout location for extra registration directories
mirror_brain | Mirror 3D object around a given axis, optionally using a warping registration
origin.templatebrain | Template brain methods
plot3d.templatebrain | Plot 3D surface of a template brain
print.templatebrain | Template brain methods
regtemplate | Get or set the registration template space in which an object lives
regtemplate<- | Get or set the registration template space in which an object lives
shortest_bridging_seq | Make or query connected graph of bridging registrations
templatebrain | Construct templatebrain object for an image registration template
templatebrain-meths | Template brain methods
update_reg_repos | Update local copy of git repository containing registrations
voxdims.templatebrain | Template brain methods
xform_brain | Transform 3D object between template brains