Type: Package
Package: nanostringr
Title: Performs Quality Control, Data Normalization, and Batch Effect
        Correction for 'NanoString nCounter' Data
Version: 0.6.1
Authors@R: c(
    person("Derek", "Chiu", , "dchiu@bccrc.ca", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7591-4881")),
    person("Aline", "Talhouk", , "atalhouk@bccrc.ca", role = "aut",
           comment = c(ORCID = "0000-0001-7760-410X")),
    person("Samuel", "Leung", , "Samuel.Leung@vch.ca", role = "aut",
           comment = c(ORCID = "0000-0003-0138-7254"))
  )
Description: Provides quality control (QC), normalization, and batch
    effect correction operations for 'NanoString nCounter' data, Talhouk
    et al. (2016) <doi:10.1371/journal.pone.0153844>.  Various metrics are
    used to determine which samples passed or failed QC.  Gene expression
    should first be normalized to housekeeping genes, before a
    reference-based approach is used to adjust for batch effects.  Raw
    NanoString data can be imported in the form of Reporter Code Count
    (RCC) files.
License: MIT + file LICENSE
URL: https://github.com/TalhoukLab/nanostringr/,
        https://talhouklab.github.io/nanostringr/
BugReports: https://github.com/TalhoukLab/nanostringr/issues
Depends: R (>= 4.2)
Imports: assertthat, ccaPP, dplyr, purrr, rlang, tibble, tidyr
Suggests: covr, knitr, rmarkdown, testthat
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-05-05 19:35:51 UTC; derekchiu
Author: Derek Chiu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7591-4881>),
  Aline Talhouk [aut] (ORCID: <https://orcid.org/0000-0001-7760-410X>),
  Samuel Leung [aut] (ORCID: <https://orcid.org/0000-0003-0138-7254>)
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Repository: CRAN
Date/Publication: 2025-05-05 19:50:02 UTC
Built: R 4.6.0; ; 2026-04-26 20:00:55 UTC; unix
