R: An R Package for Exploring Molecular Signatures Database

# An R Package for Exploring Molecular Signatures Database

## Documentation for package ‘msig’ version 1.0

- DESCRIPTION file

## Help Pages

browse_msig | Retrieve Gene set Names from MSigDB database Retrieve gene set names from MSigDB database by the gene set name and collection. the search filed is gene name.
browse_show_collection | Show collection of MSigDB database
local_msig | Query gene set names from local data
local_version | Local database version
msig_detail | Retrieve detail information of gene set
msig_download | Download MsigDB database
msig_filt | Filt data by key words Case insensitive
msig_gene | Retrieve gene by Gene set Name
msig_gene.character | Retrieve gene by Gene set Name
msig_gene.data.frame | Retrieve gene by Gene set Name
msig_geneSymbol | Retrieve gene by Gene Symbol from MsigDB
msig_geneSymbol.character | Retrieve gene by Gene Symbol from MsigDB
msig_geneSymbol.data.frame | Retrieve gene by Gene Symbol from MsigDB
msig_geneSymbol.list | Retrieve gene by Gene Symbol from MsigDB
msig_update | Update local MsigDB database
msig_version | version information of MSigDB database
msig_view | View data in viewer panel
NewMsigDB | Create NewMsigDB object for new versions of MsigDB database
read_msigdb_xml | read MSigDB xml data
related_geneset | Query related gene sets
search_msig | Query MSigDB database by cookie
search_show_collection | Show collctions for msigdb_search()
search_show_contributor | Show contributor for msigdb_search()
search_show_organism | Show organism for msigdb_search()
show_local_collection | Show collections of local MsigDB database
show_local_contributor | Show contributors of local MsigDB database
show_local_contributor_org | Show contributor_orgs of local MsigDB database
show_local_data | Show local data used in this package
show_local_sub_collection | Show sub_collections of local MsigDB database
similarity_geneset | Query similarity gene sets