R: A Statistical Framework for Comparing Sets of Trees

# A Statistical Framework for Comparing Sets of Trees

## Documentation for package ‘mixtree’ version 0.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

abouheif | Compute the Abouheif distance matrix
chisq_test | Perform Chi-Square Test on Sets of Transmission Trees
euclidean | Calculate the Euclidean distance between two distance matrices.
kendall | Compute the Kendall distance matrix
make_tree | Generate a Transmission Tree
patristic | Compute the Patristic distance matrix
permanova_test | Perform PERMANOVA on Sets of Transmission Trees
shuffle_graph_ids | Shuffle Node IDs in a Graph
tree_test | Test Differences Between Sets of Transmission Trees
validate_tree | Validate a Transmission Tree