Package: maxRgain
Title: Maximizing Polyclonal Selection Gains Using Integer Programming
Version: 1.1.0
Authors@R: c(
    person(given = "Sónia", family = "Surgy", email = "soniasurgy@isa.ulisboa.pt", role = c("aut", "cre")),
    person(given = "Jorge", family = "Cadima", email = "jcadima@isa.ulisboa.pt", role = c("aut")),
    person(given = "Elsa", family = "Gonçalves", email = "elsagoncalves@isa.ulisboa.pt", role = c("aut"))
    )
Description: Implements an Integer Programming-based method for optimising genetic gain in polyclonal selection, where the goal is to select a group of genotypes that jointly meet multi-trait selection criteria. The method uses predictors of genotypic effects obtained from the fitting of mixed models. Its application is demonstrated with grapevine data, but is applicable to other species and breeding contexts. For more details see Surgy et al. (2025) <doi:10.1007/s00122-025-04885-0>. 
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.2
BugReports: https://github.com/soniasurgy/maxRgain/issues
Imports: lpSolve, utils, stats
Suggests: knitr, rmarkdown, roxygen2, devtools, usethis
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
LazyData: true
NeedsCompilation: no
Packaged: 2026-03-03 17:52:16 UTC; Asus
Author: Sónia Surgy [aut, cre],
  Jorge Cadima [aut],
  Elsa Gonçalves [aut]
Maintainer: Sónia Surgy <soniasurgy@isa.ulisboa.pt>
Repository: CRAN
Date/Publication: 2026-03-03 18:20:02 UTC
Built: R 4.6.0; ; 2026-04-25 20:14:04 UTC; unix
