+,dph,dph-method        Sum method for discrete phase-type
                        distributions
+,ph,ph-method          Sum method for phase-type distributions
EM_step_mPH_rc          EM step for the mPH class with right-censoring,
                        for different marginal sub-intensity matrices
EMstep_MoE_PADE         EM for PH-MoE
EMstep_PADE             EM for phase-type distributions using Pade
                        approximation for matrix exponential
EMstep_RK               EM step for phase-type using Runge-Kutta
EMstep_UNI              EM for phase-type using uniformization for
                        matrix exponential
EMstep_bivdph           EM for discrete bivariate phase-type
EMstep_bivdph_MoE       EM for discrete bivariate phase-type MoE
EMstep_bivph            EM for bivariate phase-type distributions using
                        Pade for matrix exponential
EMstep_dph              EM for discrete phase-type
EMstep_dph_MoE          EM for discrete phase-type MoE
EMstep_mdph             EM for multivariate discrete phase-type
EMstep_mdph_MoE         EM for multivariate discrete phase-type MoE
Fisher                  New generic for obtaining the Fisher
                        information of survival matrix distributions
Fisher,sph-method       Fisher information method for sph class
LRT                     New generic for likelihood ratio test between
                        two matrix distribution models
LRT,ph,ph-method        LRT method for ph class
MPHstar                 Constructor function for multivariate
                        phase-type distributions (MPH* class)
MPHstar-class           Multivariate phase-type distributions obtained
                        by transformation via rewards
MPHstar_EMstep_UNI      EM step using Uniformization for MPHstar class
MPHstar_data_aggregation
                        Prepare data for the MPHstar_EMstep_UNI
MoE                     New generic for mixture-of-experts regression
                        with matrix distributions
MoE,bivdph-method       MoE method for bivdph Class
MoE,dph-method          MoE method for dph Class
MoE,mdph-method         MoE method for mdph Class
MoE,mph-method          Fit method for mph/miph class, using
                        mixture-of-experts regression
MoE,ph-method           MoE method for ph Class
Nfold                   New generic for N-fold convolution of two
                        matrix distributions
Nfold,dph-method        Nfold method for phase-type distributions
TVR                     New generic for transformation via rewards of a
                        matrix distribution
TVR,dph-method          TVR Method for dph Class
TVR,ph-method           TVR method for ph class
a_rungekutta            Runge-Kutta for the calculation of the a vector
                        in a EM step
bivdph                  Constructor function for bivariate discrete
                        phase-type distributions
bivdph-class            Bivariate discrete phase-type distributions
bivdph_density          Bivariate discrete phase-type joint density of
                        the feed forward type
bivdph_tail             Bivariate discrete phase-type joint tail of the
                        feed forward type
biviph                  Constructor function for bivariate
                        inhomogeneous phase-type distributions
biviph-class            Bivariate inhomogeneous phase-type
                        distributions
bivph                   Constructor function for bivariate phase-type
                        distributions
bivph-class             Bivariate phase-type distributions
bivph_density           Bivariate phase-type joint density of the feed
                        forward type
bivph_laplace           Bivariate phase-type joint Laplace
bivph_tail              Bivariate phase-type joint tail of the feed
                        forward type
cdf                     New generic for the distribution of matrix
                        distributions
cdf,dph-method          Distribution method for discrete phase-type
                        distributions
cdf,iph-method          Distribution method for inhomogeneous
                        phase-type distributions
cdf,miph-method         Distribution method for multivariate
                        inhomogeneous phase-type distributions
cdf,mph-method          Distribution method for multivariate phase-type
                        distributions
cdf,ph-method           Distribution method for phase-type
                        distributions
clone_matrix            Clone a matrix
clone_vector            Clone a vector
coef,bivdph-method      Coef method for bivdph class
coef,biviph-method      Coef method for biviph class
coef,bivph-method       Coef method for bivph class
coef,dph-method         Coef method for dph Class
coef,iph-method         Coef method for iph class
coef,mdph-method        Coef method for mdph class
coef,ph-method          Coef method for ph class
coef,sph-method         Coef method for sph Class
cor,MPHstar-method      Cor method for MPHstar class
cor,bivdph-method       Cor method for bivdph class
cor,bivph-method        Cor method for bivph class
cor,mdph-method         Cor method for multivariate discrete phase-type
                        distributions
cor,mph-method          Cor method for multivariate phase-type
                        distributions
cumulate_matrix         Cumulate matrix
cumulate_vector         Cumulate vector
default_step_length     Default size of the steps in the RK
dens                    New generic for the density of matrix
                        distributions
dens,bivdph-method      Density method for bivariate discrete
                        phase-type distributions
dens,biviph-method      Density method for bivariate inhomogeneous
                        phase-type distributions
dens,bivph-method       Density method for bivariate phase-type
                        distributions
dens,dph-method         Density method for discrete phase-type
                        distributions
dens,iph-method         Density method for inhomogeneous phase-type
                        distributions
dens,mdph-method        Density method for multivariate discrete
                        phase-type distributions
dens,miph-method        Density method for multivariate inhomogeneous
                        phase-type distributions
dens,mph-method         Density method for multivariate phase-type
                        distributions
dens,ph-method          Density method for phase-type distributions
dph                     Constructor function for discrete phase-type
                        distributions
dph-class               Discrete phase-type distributions
dph_pgf                 Pgf of a discrete phase-type distribution
dphcdf                  Discrete phase-type cdf
dphdensity              Discrete phase-type density
embedded_mc             Embedded Markov chain of a sub-intensity matrix
evaluate                New generic for evaluating survival matrix
                        distributions
evaluate,sph-method     Evaluation method for sph Class
expm_terms              expm terms of phase-type likelihood using
                        uniformization
expmat                  Matrix exponential
find_n                  Find n such that P(N > n) = h with N Poisson
                        distributed
find_weight             Find weight of observations
fit                     New generic for estimating matrix distributions
fit,MPHstar-method      Fit method for mph class
fit,bivdph-method       Fit method for bivdph Class
fit,bivph-method        Fit method for bivph Class
fit,dph-method          Fit method for dph class
fit,mdph-method         Fit method for mdph Class
fit,mph-method          Fit method for mph Class
fit,ph-method           Fit method for ph class
haz                     New generic for the hazard rate of matrix
                        distributions
haz,ph-method           Hazard rate method for phase-type distributions
inf_norm                L inf norm of a matrix
initial_state           Initial state of Markov jump process
iph                     Constructor function for inhomogeneous
                        phase-type distributions
iph-class               Inhomogeneous phase-type distributions
laplace                 New generic for Laplace transform of matrix
                        distributions
laplace,bivph-method    Laplace method for bivph class
laplace,mph-method      Laplace method for multivariate phase-type
                        distributions
laplace,ph-method       Laplace method for phase-type distributions
linCom                  New generic for linear combinations of
                        multivariate matrix distributions
linCom,MPHstar-method   Linear combination method for MPHstar class
linCom,bivph-method     Linear combination method for bivariate
                        phase-type distributions
linear_combination      Computes PH parameters of a linear combination
                        of vector from MPHstar
logLik,ph-method        Loglikelihood method for ph class
logLikelihoodDPH        Loglikelihood for discrete phase-type
logLikelihoodDPH_MoE    Loglikelihood for discrete phase-type MoE
logLikelihoodMgev_PADE
                        Loglikelihood of matrix-GEV using Pade
logLikelihoodMgev_RK    Loglikelihood of matrix-GEV using Runge-Kutta
logLikelihoodMgev_UNI   Loglikelihood of matrix-GEV using
                        uniformization
logLikelihoodMgompertz_PADE
                        Loglikelihood of matrix-Gompertz using Pade
logLikelihoodMgompertz_PADEs
                        Loglikelihood of PI with matrix-Gompertz using
                        Pade
logLikelihoodMgompertz_RK
                        Loglikelihood of matrix-Gompertz using
                        Runge-Kutta
logLikelihoodMgompertz_RKs
                        Loglikelihood of PI with matrix-Gompertz using
                        Runge-Kutta
logLikelihoodMgompertz_UNI
                        Loglikelihood of matrix-Gompertz using
                        uniformization
logLikelihoodMgompertz_UNIs
                        Loglikelihood of PI with matrix-Gompertz using
                        Uniformization
logLikelihoodMloglogistic_PADE
                        Loglikelihood of matrix-loglogistic using Pade
logLikelihoodMloglogistic_PADEs
                        Loglikelihood of PI with matrix-loglogistic
                        using Pade
logLikelihoodMloglogistic_RK
                        Loglikelihood of matrix-loglogistic using
                        Runge-Kutta
logLikelihoodMloglogistic_RKs
                        Loglikelihood of PI with matrix-loglogistic
                        using Runge-Kutta
logLikelihoodMloglogistic_UNI
                        Loglikelihood of matrix-loglogistic using
                        uniformization
logLikelihoodMloglogistic_UNIs
                        Loglikelihood of PI with matrix-loglogistic
                        using uniformization
logLikelihoodMlognormal_PADE
                        Loglikelihood of matrix-lognormal using Pade
logLikelihoodMlognormal_PADEs
                        Loglikelihood of PI with matrix-lognormal using
                        Pade
logLikelihoodMlognormal_RK
                        Loglikelihood of matrix-lognormal using
                        Runge-Kutta
logLikelihoodMlognormal_RKs
                        Loglikelihood of PI matrix-lognormal using
                        Runge-Kutta
logLikelihoodMlognormal_UNI
                        Loglikelihood of matrix-lognormal using
                        uniformization
logLikelihoodMlognormal_UNIs
                        Loglikelihood of PI with matrix-lognormal using
                        uniformization
logLikelihoodMpareto_PADE
                        Loglikelihood of matrix-Pareto using Pade
logLikelihoodMpareto_PADEs
                        Loglikelihood of PI with matrix-Pareto using
                        Pade
logLikelihoodMpareto_RK
                        Loglikelihood of matrix-Pareto using
                        Runge-Kutta
logLikelihoodMpareto_RKs
                        Loglikelihood of PI with matrix-Pareto using
                        Runge-Kutta
logLikelihoodMpareto_UNI
                        Loglikelihood of matrix-Pareto using
                        uniformization
logLikelihoodMpareto_UNIs
                        Loglikelihood of PI with matrix-Pareto using
                        uniformization
logLikelihoodMweibull_PADE
                        Loglikelihood of matrix-Weibull using Pade
logLikelihoodMweibull_PADEs
                        Loglikelihood of PI with matrix-Weibull using
                        Pade
logLikelihoodMweibull_RK
                        Loglikelihood of matrix-Weibull using
                        Runge-Kutta
logLikelihoodMweibull_RKs
                        Loglikelihood of PI with matrix-Weibull using
                        Runge-Kutta
logLikelihoodMweibull_UNI
                        Loglikelihood of matrix-Weibull using
                        uniformization
logLikelihoodMweibull_UNIs
                        Loglikelihood of PI with matrix-Weibull using
                        uniformization
logLikelihoodPH_MoE     Loglikelihood for PH-MoE
logLikelihoodPH_PADE    Loglikelihood of phase-type using Pade
                        approximation
logLikelihoodPH_PADEs   Loglikelihood of PI with phase-type using Pade
logLikelihoodPH_RK      Loglikelihood of phase-type using Runge-Kutta
logLikelihoodPH_RKs     Loglikelihood of PI with phase-type using
                        Runge-Kutta
logLikelihoodPH_UNI     Loglikelihood of phase-type using
                        uniformization
logLikelihoodPH_UNIs    Loglikelihood of PI with phase-type using
                        uniformization
logLikelihoodbivDPH     Loglikelihood for bivariate discrete phase-type
logLikelihoodbivDPH_MoE
                        Loglikelihood for bivariate discrete phase-type
                        MoE
logLikelihoodbivPH      Loglikelihood for Bivariate PH
logLikelihoodmDPH       Loglikelihood for multivariate discrete
                        phase-type
logLikelihoodmDPH_MoE   Loglikelihood for multivariate discrete
                        phase-type MoE
m_exp_sum               Computes exp(Sx) via series representation
marginal                New generic for the marginals of multivariate
                        matrix distributions
marginal,MPHstar-method
                        Marginal method for MPHstar class
marginal,bivdph-method
                        Marginal method for bivdph class
marginal,biviph-method
                        Marginal method for biviph class
marginal,bivph-method   Marginal method for bivph class
marginal,mdph-method    Marginal method for mdph class
marginal,miph-method    Marginal method for multivariate inhomogeneous
                        phase-type distributions
marginal,mph-method     Marginal method for multivariate phase-type
                        distributions
marginal_expectation    Marginal conditional expectations
matrix_exponential      Matrix exponential
matrix_inverse          Inverse of a matrix
matrix_power            Computes A^n
matrix_product          Product of two matrices
matrix_vanloan          Creates the matrix (A1, B1 ; 0, A2)
matrixdist-package      Statistics for Matrix Distributions
max_diagonal            Maximum diagonal element of a matrix
maximum                 New generic for maximum of two matrix
                        distributions
maximum,dph,dph-method
                        Maximum method for discrete phase-type
                        distributions
maximum,iph,iph-method
                        Maximum method for inhomogeneous phase-type
                        distributions
maximum,ph,ph-method    Maximum method for phase-type distributions
mdph                    Constructor function for multivariate discrete
                        phase-type distributions
mdph-class              Multivariate discrete phase-type distributions
mdphdensity             Multivariate discrete phase-type density
mean,MPHstar-method     Mean method for MPHstar class
mean,bivdph-method      Mean method for bivdph class
mean,bivph-method       Mean Method for bivph class
mean,dph-method         Mean method for discrete phase-type
                        distributions
mean,mdph-method        Mean method for multivariate discrete
                        phase-type distributions
mean,mph-method         Mean method for multivariate phase-type
                        distributions
mean,ph-method          Mean method for phase-type distributions
merge_matrices          Merges the matrices S11, S12 and S22 into a
                        sub-intensity matrix
mgevcdf                 Matrix-GEV cdf
mgevden                 Matrix-GEV density
mgf                     New generic for mgf of matrix distributions
mgf,bivph-method        Mgf method for bivph class
mgf,mph-method          Mgf method for multivariate phase-type
                        distributions
mgf,ph-method           Mgf method for phase-type distributions
mgompertzcdf            Matrix-Gompertz cdf
mgompertzden            Matrix-Gompertz density
minimum                 New generic for minimum of two matrix
                        distributions
minimum,dph,dph-method
                        Minimum method for discrete phase-type
                        distributions
minimum,iph,iph-method
                        Minimum method for inhomogeneous phase-type
                        distributions
minimum,ph,ph-method    Minimum method for phase-type distributions
miph                    Constructor function for multivariate
                        inhomogeneous phase-type distributions
miph-class              Multivariate inhomogeneous phase-type
                        distributions
mixture                 New generic for mixture of two matrix
                        distributions
mixture,dph,dph-method
                        Mixture method for phase-type distributions
mixture,ph,ph-method    Mixture method for phase-type distributions
mloglogisticcdf         Matrix-loglogistic cdf
mloglogisticden         Matrix-loglogistic density
mlognormalcdf           Matrix-lognormal cdf
mlognormalden           Matrix-lognormal density
moment                  New generic for moments of matrix distributions
moment,bivdph-method    Moment method for bivdph class
moment,bivph-method     Moment method for bivph class
moment,dph-method       Moment method for discrete phase-type
                        distributions
moment,mdph-method      Moment method for multivariate discrete
                        phase-type distributions
moment,mph-method       Moment method for multivariate phase-type
                        distributions
moment,ph-method        Moment method for phase-type distributions
mparetocdf              Matrix-Pareto cdf
mparetoden              Matrix-Pareto density
mph                     Constructor function for multivariate
                        phase-type distributions
mph-class               Multivariate phase-type distributions
mweibullcdf             Matrix-Weibull cdf
mweibullden             Matrix-Weibull density
n_pos                   Find how many states have positive reward
new_state               New state in a Markov jump process
pgf                     New generic for pgf of matrix distributions
pgf,bivdph-method       Pgf method for bivariate discrete phase-type
                        distributions
pgf,dph-method          Pgf Method for discrete phase-type
                        distributions
pgf,mdph-method         Pgf method for multivariate discrete phase-type
                        distributions
ph                      Constructor function for phase-type
                        distributions
ph-class                Phase-type distributions
ph_laplace              Laplace transform of a phase-type distribution
phcdf                   Phase-type cdf
phdensity               Phase-type density
plus_states             Find which states have positive reward
pow2_matrix             Computes A^(2^n)
quan                    New generic for the quantile of matrix
                        distributions
quan,ph-method          Quantile method for phase-type distributions
rMDPHstar               Simulate MDPH*
rMIPHstar               Simulate a MIPH* random vector
rMPHstar                Simulate a MPH* random vector
random_reward           Random reward matrix
random_structure        Random structure of a phase-type
random_structure_bivph
                        Random structure of a bivariate phase-type
rdphasetype             Simulate discrete phase-type
reg                     New generic for regression with matrix
                        distributions
reg,ph-method           Regression method for ph Class
revers_data_trans       Applies the inverse of the GEV transformation
                        but giving back the resulting vector in reverse
                        order
rew_sanity_check        Transform a reward matrix with very small
                        rewards to avoid numerical problems
riph                    Random inhomogeneous phase-type
rmatrixgev              Random matrix GEV
rphasetype              Simulate phase-type
runge_kutta             Runge-Kutta for the calculation of the a and b
                        vectors and the c matrix in a EM step
show,MPHstar-method     Show method for multivariate phase-type
                        distributions
show,bivdph-method      Show method for bivariate discrete phase-type
                        distributions
show,biviph-method      Show method for bivariate inhomogeneous
                        phase-type distributions
show,bivph-method       Show method for bivariate phase-type
                        distributions
show,dph-method         Show method for discrete phase-type
                        distributions
show,iph-method         Show method for inhomogeneous phase-type
                        distributions
show,mdph-method        Show method for multivariate discrete
                        phase-type distributions
show,miph-method        Show method for multivariate inhomogeneous
                        phase-type distributions
show,mph-method         Show method for multivariate phase-type
                        distributions
show,ph-method          Show method for phase-type distributions
show,sph-method         Show method for survival phase-type objects
sim                     New generic for simulating matrix distributions
sim,MPHstar-method      Simulation method for multivariate phase-type
                        distributions
sim,bivdph-method       Simulation method for bivariate discrete
                        phase-type distributions
sim,biviph-method       Simulation method for bivariate inhomogeneous
                        phase-type distributions
sim,bivph-method        Simulation method for bivariate phase-type
                        distributions
sim,dph-method          Simulation method for phase-type distributions
sim,iph-method          Simulation method for inhomogeneous phase-type
                        distributions
sim,mdph-method         Simulation method for multivariate discrete
                        phase-type distributions
sim,miph-method         Simulation method for inhomogeneous
                        multivariate phase-type distributions
sim,mph-method          Simulation method for multivariate phase-type
                        distributions
sim,ph-method           Simulation method for phase-type distributions
sph                     Constructor function for survival phase-type
                        objects
sph-class               Survival analysis for phase-type distributions
sum_dph                 Computes the initial distribution and
                        sub-intensity of the sum of two discrete
                        phase-type distributed random variables
sum_ph                  Computes the initial distribution and
                        sub-intensity of the sum of two phase-type
                        distributed random variables.
tvr_dph                 Performs TVR for discrete phase-type
                        distributions
tvr_ph                  Performs TVR for phase-type distributions
var,MPHstar-method      Var method for MPHstar class
var,bivdph-method       Var method for bivdph class
var,bivph-method        Var method for bivph class
var,dph-method          Var method for discrete phase-type
                        distributions
var,mdph-method         Var method for multivariate discrete phase-type
                        distributions
var,mph-method          Var method for multivariate phase-type
                        distributions
var,ph-method           Var method for phase-type distributions
vector_of_matrices      Computes the elements S^n / n! until the a
                        given size
vector_of_matrices_2    Computes the elements S^n / n! until given
                        value of n
vector_of_powers        Computes elements A^n until the given size
