estimaterates           Estimate substitution rate matrix.
estimaterates_f         Estimate substitution rate matrix.
markophylo-package      Markov chain models for phylogenetic trees.
patterns                Unique phyletic patterns with counts.
plottree                Plot the tree used with different hypothesized
                        branch groupings (or clades) following unique
                        rates coloured differently.
print.markophylo        Print summary information for the model fit.
simdata1                Simulated data.
