accumulate_data	process.data
backward_prob	backward_prob
cjs.accumulate	cjs.accumulate
cjs.hessian	cjs.hessian
cjs.initial	cjs.initial
cjs.lnl	cjs.lnl
cjs_admb	cjs_admb
cjs_delta	cjs_delta
cjs_dmat	mvms_dmat
cjs_gamma	cjs_gamma
cjs_tmb	cjs_tmb
coef.crm	coef.crm
collapseCH	splitCH
compute_matrices	compute_matrices
compute_real	compute_real
convert.link.to.real	convert.link.to.real
create.dm	create.dm
create.dmdf	create.dmdf
create.dml	create.dm
create.fixed.matrix	create.fixed.matrix
create.links	create.links
create.model.list	crm.wrapper
crm	crm
crm.wrapper	crm.wrapper
crmlist_fromfiles	crm.wrapper
deriv.inverse.link	deriv_inverse.link
deriv_inverse.link	deriv_inverse.link
dipper	dipper
dmat_hsmm2hmm	dmat_hsmm2hmm
fix.parameters	fix.parameters
function.wrapper	function.wrapper
fx.aic	function.wrapper
fx.par.count	function.wrapper
global_decode	global_decode
hmm.lnl	HMMLikelihood
hmmDemo	hmmDemo
HMMLikelihood	HMMLikelihood
hsmm2hmm	hsmm2hmm
initiate_pi	initiate_pi
inverse.link	inverse.link
js	js
js.accumulate	js.accumulate
js.hessian	js.hessian
js.lnl	js.lnl
load.model	crm.wrapper
local_decode	local_decode
loglikelihood	R_HMMLikelihood
make.design.data	make.design.data
mcmc_mode	resight.matrix
merge.design.covariates	merge_design.covariates
merge_design.covariates	merge_design.covariates
mixed.model	mixed.model.admb
mixed.model.admb	mixed.model.admb
mixed.model.dat	mixed.model.admb
model.table	crm.wrapper
ms2_gamma	cjs_gamma
mscjs	mscjs
mscjs_tmb	mscjs_tmb
msld_tmb	msld_tmb
mstrata	mstrata
ms_dmat	mvms_dmat
ms_gamma	cjs_gamma
mvmscjs	mvmscjs
mvmscjs_delta	cjs_delta
mvmscjs_tmb	mvmscjs_tmb
mvms_design_data	mvms_design_data
mvms_dmat	mvms_dmat
naive.survival	resight.matrix
omega	omega
p.boxplot	Phi.mean
p.mean	Phi.mean
Paradise_shelduck	Paradise_shelduck
Phi.boxplot	Phi.mean
Phi.mean	Phi.mean
predict.crm	predict.crm
print.crm	print.crm
print.crmlist	print.crmlist
probitCJS	probitCJS
proc.form	proc.form
process.ch	process.ch
process.data	process.data
ps	Paradise_shelduck
reals	HMMLikelihood
reindex	mixed.model.admb
rerun_crm	crm.wrapper
resight.matrix	resight.matrix
R_HMMLikelihood	R_HMMLikelihood
scale_dm	set_scale
scale_par	set_scale
sealions	sealions
set.fixed	set.fixed
set.initial	set.initial
setup.model	setup.model
setup.parameters	setup.parameters
setupHMM	setup.model
setup_admb	setup_admb
setup_tmb	setup_tmb
set_mvms	set_mvms
set_scale	set_scale
simHMM	simHMM
skagit	skagit
smsld_tmb	smsld_tmb
splitCH	splitCH
tagloss	tagloss
ums2_dmat	mvms_dmat
ums_dmat	mvms_dmat
unscale_par	set_scale
valid.parameters	valid.parameters
