R: Spatiotemporal Nutrient Balance Analysis Across Agricultural and Municipal Systems

# Spatiotemporal Nutrient Balance Analysis Across Agricultural and Municipal Systems

## Documentation for package ‘manureshed’ version 0.1.5

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

manureshed-package | manureshed: Manureshed Analysis with WWTP Integration
add_centroid_coordinates | Add Centroid Coordinates to Spatial Data
add_texas_huc8 | Add Texas HUC8 Data (Updated for OSF)
agri_classify_complete | Complete Agricultural Classification Pipeline
agri_classify_complete_custom | Complete Agricultural Classification Pipeline with Custom Efficiency Factors
agri_classify_nitrogen | Classify Agricultural Nitrogen Status
agri_classify_nitrogen_custom | Classify Agricultural Nitrogen Status with Custom Efficiency Factor
agri_classify_phosphorus | Classify Agricultural Phosphorus Status
agri_classify_phosphorus_custom | Classify Agricultural Phosphorus Status with Custom Efficiency Factor
agri_process_nugis | Process NuGIS Data for Manureshed Analysis
batch_analysis_enhanced | Enhanced Batch Analysis with Full Visualizations
batch_analysis_parallel | Batch Analysis with Parallel Processing
batch_analysis_years | Batch Analysis Across Multiple Years
benchmark_analysis | Benchmark Analysis Performance
calculate_cropland_threshold | Calculate Cropland Threshold for Exclusion
calculate_transition_probabilities | Calculate Spatial Transition Probabilities
check_builtin_data | Check Data Availability from OSF
citation_info | Display Package Citation Information
clean_category_names | Clean Category Names for Display
clean_text | Clean Text Data
clear_data_cache | Clear Data Cache
compare_analyses | Compare Two Analysis Results
compare_regions | Compare Multiple Regions
compare_scenarios | Compare Multiple Analysis Scenarios
CONUS_STATES | CONUS States
convert_load_units | Convert Load Units to Tons
create_analysis_report | Create Analysis Report
create_classification_summary | Create Classification Summary Table
create_network_plot | Create Network Plot from Transition Probabilities
data_sources | NuGIS and EPA WWTP Data Sources
download_all_data | Download All Datasets from OSF
download_cafo_data | Download CAFO Deep-Learning Detection Data from OSF
download_osf_data | Download and Cache Data from OSF
export_for_gis | Export Results for GIS Applications
export_for_policy | Export for Policy Briefs
export_for_publication | Export for Publication
export_hub_results | Export Hub Site Selection Results to Disk
filter_by_state | Filter Data by State
format_huc8 | Format HUC8 Codes
get_cropland_threshold | Get Cropland Threshold by Scale
get_nutrient_colors | Default Color Schemes for Nutrient Classifications
get_region_definitions | Get Built-in Region Definitions
get_state_boundaries | Get State Boundaries for Mapping
get_state_fips | Get State FIPS Code
health_check | Check Package Health and Dependencies
integrate_complete | Complete Integration Pipeline (Updated)
integrate_wwtp_agricultural | Integrate WWTP Data with Agricultural Classifications (Updated)
KG_TO_TONS | Conversion Factor: Kilograms to US Tons
launch_dashboard | Launch Interactive Manureshed Dashboard
LBS_TO_KG | Conversion Factor: Pounds to Kilograms
LBS_TO_TONS | Conversion Factor: Pounds to US Tons
list_available_years | List Available Built-in Years
list_regions | List Available Regions
load_builtin_boundaries | Load Built-in Spatial Boundaries from OSF
load_builtin_nugis | Load Built-in NuGIS Data from OSF
load_builtin_wwtp | Load Built-in WWTP Data from OSF
load_user_wwtp | Load User WWTP Data
manureshed | manureshed: Manureshed Analysis with WWTP Integration
MANURESHED_CRS | Standard CRS for Manureshed Analysis
map_agricultural_classification | Create Agricultural Classification Map
map_hub_sites | Map Hub Site Suitability Scores (static)
map_wwtp_columns | Map WWTP Column Names to Standard Format
map_wwtp_influence | Create WWTP Influence Map
map_wwtp_points | Create WWTP Point Map
P2O5_TO_P | Conversion Factor: P2O5 to P
plot_absolute_changes | Create Absolute Change Plot
plot_before_after_comparison | Create Before/After Comparison Plot
plot_impact_ratios | Create Impact Ratio Plot
quick_analysis | Quick Analysis with Visualization
quick_check | Quick Data Check
quick_state_analysis | Quick State Analysis with Visualization
run_builtin_analysis | Complete Manureshed Analysis Workflow (Built-in Data)
run_state_analysis | Run State-Level Analysis
save_analysis_summary | Save Analysis Summary
save_centroid_data | Save Centroid Data
save_plot | Save Plot
save_spatial_data | Save Spatial Data
save_transition_matrix | Save Transition Probability Matrix
score_hub_sites | Score County-Level Nutrient Recovery Hub Sites
summarize_results | Print Summary of Analysis Results
test_osf_connection | Test OSF Connection
validate_columns | Validate Required Columns
view_cheatsheet | View Package Cheat Sheet
wwtp_aggregate_by_boundaries | Aggregate WWTP Data by Spatial Boundaries
wwtp_classify_sources | Classify WWTP Sources by Load Size
wwtp_clean_data | Clean WWTP Data
wwtp_filter_positive_loads | Filter WWTP Data for Positive Loads
wwtp_process_complete | Complete WWTP Processing Pipeline
wwtp_to_spatial | Convert WWTP Data to Spatial Format