# Generated by roxygen2: do not edit by hand

S3method("[[",malan_pedigreelist)
S3method("[[",malan_population)
S3method(as_tbl_graph,malan_pedigreelist)
S3method(plot,malan_pedigree)
S3method(plot,malan_pedigreelist)
S3method(print,malan_pedigree)
S3method(print,malan_pedigreelist)
S3method(print,malan_population)
S3method(print,malan_population_abort)
export(brothers_matching)
export(build_haplotype_hashmap)
export(build_pedigrees)
export(calc_autosomal_genotype_conditional_cumdist)
export(calc_autosomal_genotype_probs)
export(construct_M)
export(count_brothers)
export(count_haplotype_near_matches_individuals)
export(count_haplotype_occurrences_individuals)
export(count_haplotype_occurrences_pedigree)
export(count_uncles)
export(delete_haplotypeids_hashmap)
export(estimate_autotheta_1subpop_genotypes)
export(estimate_autotheta_1subpop_individuals)
export(estimate_autotheta_subpops_genotypes)
export(estimate_autotheta_subpops_individuals)
export(estimate_autotheta_subpops_pids)
export(estimate_autotheta_subpops_unweighted_genotypes)
export(estimate_autotheta_subpops_unweighted_pids)
export(father_matches)
export(from_igraph)
export(generate_get_founder_haplotype_db)
export(generate_get_founder_haplotype_ladder)
export(get_allele_counts_genotypes)
export(get_allele_counts_pids)
export(get_brothers)
export(get_children)
export(get_cousins)
export(get_family_info)
export(get_father)
export(get_generation)
export(get_haplotype)
export(get_haplotypes_in_pedigree)
export(get_haplotypes_individuals)
export(get_haplotypes_pids)
export(get_individual)
export(get_individuals)
export(get_matching_pids_from_hashmap)
export(get_nodes_edges)
export(get_pedigree_as_graph)
export(get_pedigree_from_individual)
export(get_pedigree_id)
export(get_pedigree_id_from_pid)
export(get_pid)
export(get_pids_in_pedigree)
export(get_uncles)
export(get_zero_haplotype_generator)
export(grandfather_matches)
export(haplotype_matches_individuals)
export(haplotype_partially_matches_individuals)
export(haplotypes_to_hashes)
export(infer_generation)
export(infer_generations)
export(load_haplotypes)
export(load_individuals)
export(meioses_generation_distribution)
export(meiotic_dist)
export(meiotic_dist_threshold)
export(meiotic_radius)
export(mixture_info_by_individuals_2pers)
export(mixture_info_by_individuals_3pers)
export(mixture_info_by_individuals_4pers)
export(mixture_info_by_individuals_5pers)
export(pedigree_as_igraph)
export(pedigree_haplotype_matches_in_pedigree_meiosis_L1_dists)
export(pedigree_haplotype_near_matches_meiosis)
export(pedigree_size)
export(pedigree_size_generation)
export(pedigrees_all_populate_autosomal)
export(pedigrees_all_populate_haplotypes)
export(pedigrees_all_populate_haplotypes_custom_founders)
export(pedigrees_all_populate_haplotypes_ladder_bounded)
export(pedigrees_count)
export(pedigrees_table)
export(population_populate_autosomal_infinite_alleles)
export(population_size_generation)
export(print_individual)
export(relationship_allele_diff_dist)
export(relationship_allele_diff_dist_sym)
export(sample_autosomal_genotype)
export(sample_geneology)
export(sample_geneology_varying_size)
export(set_generation)
export(split_by_haplotypes)
import(Rcpp)
import(RcppArmadillo)
import(RcppProgress)
import(tibble)
importFrom(RcppArmadillo,fastLm)
importFrom(dplyr,mutate)
importFrom(graphics,par)
importFrom(igraph,V)
importFrom(igraph,get.edgelist)
importFrom(igraph,girth)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,graph_from_literal)
importFrom(igraph,is_directed)
importFrom(igraph,layout.reingold.tilford)
importFrom(igraph,layout_as_tree)
importFrom(igraph,plot.igraph)
importFrom(igraph,union)
importFrom(igraph,vcount)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,tbl_graph)
importFrom(utils,head)
useDynLib(malan)
