VERSION 0.1.0
==========================

  Initial CRAN submission.
  

CHANGES IN VERSION 0.1.1
==========================

	Internal changes:
	-----------------
	  - Description file correction
	    · Edit package description (add reference)
	  - "vqsresub" function added

CHANGES IN VERSION 0.1.2
==========================

	Internal changes:
	-----------------
	  - Description file correction
	    · Abbreviation explained
	  - Unnecessary print() in all functions removed
	  
CHANGES IN VERSION 0.1.3
==========================

	Internal changes:
	-----------------
	  - An option to compare viral quasispecies at amino acid level was added to
  "vqscompare" function ("proteincoding" and "removestopcodon" arguments).
	  - "AAcompare" function added to the package
	  - Documentations updated
	  - Reference in the DESCRIPTION file updated
	  - Github link in README.md fixed
	  
CHANGES IN VERSION 0.1.4
==========================

	Internal changes:
	-----------------
	  - pairwiseAlignment() has moved from Biostrings to the pwalign package.
	  
CHANGES IN VERSION 0.1.5
==========================

	Internal changes:
	-----------------
	  - Default setting of pctopt function has been changed from 
	  ignoregappositions = FALSE to ignoregappositions = TRUE.
	  - Citation of published paper of this package has been updated.
