R: Breeding-Related Mixed-Effects Models

# Breeding-Related Mixed-Effects Models

## Documentation for package ‘lme4breeding’ version 1.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

adjBeta | Adjusting fixed effects for intercept
balanceData | Balance a dataset
condVarRotated | Get the rotated conditional variance matrix
Dtable | Get the hypertable for predictions
fitted-method | Relationship-based mixed-effects model fits
getMME | Build the mixed model equations from a lmeb object
lme4breeding | *L*inear *m*ixed *e*quations *4* *B*reeding
lmeb | Fit breeding-related mixed-effects models
lmeb-class | Relationship-based mixed-effects model fits
lmebreed | Fit breeding-related mixed-effects models
mkMmeIndex | Table to track effects
predict.lmeb | Predict form of a LMM fitted with lmeb/lmebreed
predict.lmebreed | Predict form of a LMM fitted with lmeb/lmebreed
ranef-method | Relationship-based mixed-effects model fits
residuals-method | Relationship-based mixed-effects model fits
smm | sparse model matrix
umat | Rotation matrix UDU' decomposition