R: Linear Fixed/Mixed Effects Models for Diallel Crosses

# Linear Fixed/Mixed Effects Models for Diallel Crosses

## Documentation for package ‘lmDiallel’ version 1.0.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

anova.diallel | Methods for diallel model fitting
blockMatrixDiagonal | Creates block diagonal matrix. It is used internally.
checkScheme | Utilities for fitting diallel models.
DD | Dominant Deviation effect
diallel.eff | Functions to retreive full list of genetical effects
diallelMET | Factitious dataset for Diallel analysis
emm.diallel | Utilities for fitting diallel models.
expand.diallel | Create a Data Frame from All Combinations of Parentals
G1.eff | Functions to retreive full list of genetical effects
G2.eff | Functions to retreive full list of genetical effects
G3.eff | Functions to retreive full list of genetical effects
G4.eff | Functions to retreive full list of genetical effects
GCA | General Combining Ability effect
GCAC | General Combining Ability without considering the selfed parents
GCAmis | General Combining Ability effect
GE2.eff | Functions to retreive full list of genetical effects
GE2r.eff | Functions to retreive full list of genetical effects
GE3.eff | Functions to retreive full list of genetical effects
GE3r.eff | Functions to retreive full list of genetical effects
glht.diallel | Methods for diallel model fitting
glht.diallelMod | Functions to retreive full list of genetical effects
griffing56 | Griffing's dataset for diallel analysis
H.BAR | Average heterosis effect
hayman1.eff | Functions to retreive full list of genetical effects
hayman2.eff | Functions to retreive full list of genetical effects
hayman54 | Hayman dataset for diallel analysis
Hi | Average heterosis effect
int.matrix | Utilities for fitting diallel models.
lm.diallel | Fitting diallel linear models
lonnquist61 | Half diallel of maize dataset
matBlock | Design matrix for blocks
MDD | Mean Dominance Deviation effect
MET1.eff | Functions to retreive full list of genetical effects
MET2.eff | Functions to retreive full list of genetical effects
MET3.eff | Functions to retreive full list of genetical effects
mmer.diallel | Fitting random diallel linear models
model.matrix.diallel | Methods for diallel model fitting
model.matrixDiallel | Incidence matrices for Diallel model parametrisation
model.matrixDiallel.MET | Incidence matrices for Diallel model parametrisation
predict.diallel | Methods for diallel model fitting
REC | Reciprocal Effect not parted into RGCA and RSCA
REC.G3 | Reciprocal Effect not parted into RGCA and RSCA
RGCA | Reciprocal General Combining Ability
RSCA | Reciprocal Specific Combining Ability
SCA | Specific Combining Ability
SCA.G3 | Specific Combining Ability
SCA.GE | Specific Combining Ability
SCAmis | Specific Combining Ability
SP | Selfed Parents effect
summary.diallel | Methods for diallel model fitting
tSCA | Total Specific Combining Ability
vcov.diallel | Methods for diallel model fitting
VEi | Variety Effect
zhang05 | Data for diallel analysis from Zhang (2005)