calc.locallod           Calculate LOD score at physical position of
                        each gene
combinedist             Combine distance matrices into a single such
corbetw2mat             Calculate correlations between columns of two
                        matrices
distee                  Calculate distance between two gene expression
                        data sets
disteg                  Calculate distance between two gene expression
                        data sets
expr-data               Example gene expression data
f2cross                 Example experimental cross data
find.gene.pseudomarker
                        Find nearest peudomarker to each gene
findCommonID            Find individuals in common between a cross and
                        a phenotype matrix
fscale                  Standardize the columns of a matrix
genepos                 Genomic positions of genes in simulated
                        expression data
lineupversion           Installed version of R/lineup
omitdiag                Replace the diagonal in a distance matrix with
                        missing values
plot.lineupdist         Plot summary of inter-individual distances
plot2dist               Plot two sets of inter-individual distances
                        against one another
plotEGclass             Plot classifier of eQTL genotype from
                        expression data
pmap                    Physical map of markers
pulldiag                Pull out the diagonal from a distance matrix
subset.lineupdist       Subsetting distance matrix
summary.lineupdist      Summarize inter-individual distances
