R: Latent Effect Adjustment After Primary Projection

# Latent Effect Adjustment After Primary Projection

## Documentation for package ‘leapp’ version 1.3

- DESCRIPTION file

## Help Pages

leapp-package | latent effect adjustment after primary projection
AlternateSVD | Alternating singular value decomposition
FindAUC | Compute the area under the ROC curve (AUC)
FindFpr | Compute the false positive rate at given sizes of retrieved genes
FindPrec | compute the precision at given sizes of retrieved genes
FindRec | compute the recall at given sizes of retrieved genes
FindTpr | compute the true positive rate at given sizes of retrieved genes
IPOD | Iterative penalized outlier detection algorithm
IPODFUN | compute the iterative penalized outlier detection given the noise standard deviation sigma
leapp | latent effect adjustment after primary projection
Pvalue | Calculate statistics and p-values
ridge | Outlier detection with a ridge penalty
ROCplot | plot ROC curve
simdat | Simulated gene expression data affected by a group variable and an unobserved factor