# Generated by roxygen2: do not edit by hand

export(color_distance)
export(complex_html_text)
export(convert_01)
export(convert_01_to_connect)
export(convert_range_to_node)
export(correct_get_color)
export(correct_type)
export(count_to_tree)
export(create_hub)
export(create_theme)
export(create_unit)
export(df_merge)
export(df_tree)
export(dt_transpose_header)
export(fa_read)
export(fa_write)
export(file_get_dir)
export(file_get_name)
export(file_to_unit)
export(get_color)
export(gradient_color)
export(head_line)
export(hub_to_unit)
export(learn_data)
export(learn_data_from_file)
export(learn_data_from_files)
export(learn_data_from_unit)
export(learn_data_from_unit_list)
export(learn_df)
export(learn_field)
export(learn_legend)
export(learn_line)
export(learn_profile)
export(learn_separator)
export(learn_subdf)
export(learn_theme_align)
export(learn_theme_alignment)
export(learn_theme_bar)
export(learn_theme_basic_plot)
export(learn_theme_basic_theme)
export(learn_theme_binary)
export(learn_theme_border)
export(learn_theme_common_themes)
export(learn_theme_connection)
export(learn_theme_domain)
export(learn_theme_externalshape)
export(learn_theme_heatmap)
export(learn_theme_image)
export(learn_theme_label)
export(learn_theme_linechart)
export(learn_theme_piechart)
export(learn_theme_specific_themes)
export(learn_theme_strip_label)
export(learn_type)
export(line_clean)
export(line_split)
export(longest_continuous_match)
export(merge_unit)
export(search_tree_file)
export(sort_color)
export(train_theme)
export(unite_rows)
export(use.theme)
export(vector_tree)
export(write_hub)
export(write_raw)
export(write_unit)
exportClasses(itol.hub)
exportClasses(itol.theme)
exportClasses(itol.unit)
exportMethods("+")
exportMethods(show)
import(RColorBrewer)
import(ggsci)
import(miniUI)
import(rstudioapi)
import(shiny)
import(stringr)
importFrom(ape,as.phylo)
importFrom(ape,drop.tip)
importFrom(ape,makeNodeLabel)
importFrom(ape,mrca)
importFrom(ape,read.FASTA)
importFrom(ape,read.tree)
importFrom(ape,root)
importFrom(ape,write.tree)
importFrom(colourpicker,colourInput)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,is.data.table)
importFrom(data.table,melt)
importFrom(data.table,setcolorder)
importFrom(data.table,setnames)
importFrom(data.table,transpose)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,starts_with)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(dplyr,summarize)
importFrom(grDevices,boxplot.stats)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(methods,new)
importFrom(purrr,discard)
importFrom(seqinr,write.fasta)
importFrom(stats,as.dist)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,na.omit)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(stringdist,stringsim)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_length)
importFrom(stringr,str_remove)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(tidyr,separate)
importFrom(utils,file_test)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(utils,write.table)
importFrom(wesanderson,wes_palettes)
importMethodsFrom(methods,show)
