isoorbi-package         isoorbi: Process Orbitrap Isotopocule Data
orbi_add_blocks_to_plot
                        Plot blocks background
orbi_adjust_block       Manually adjust block delimiters
orbi_aggregate_raw      Aggregate data from raw files
orbi_analyze_shot_noise
                        Shot noise calculation
orbi_calculate_ions     Calculate ions from intensities
orbi_calculate_ratios   Calculate direct isotopocule ratios
orbi_calculate_summarized_ratio
                        Calculate isotopocule ratio
orbi_check_isoraw       Check for the isoorbi raw file reader
orbi_default_theme      Default isoorbi plotting theme
orbi_define_basepeak    Define the denominator for ratio calculation
orbi_define_block_for_flow_injection
                        Define data block for flow injection
orbi_define_blocks_for_dual_inlet
                        Binning raw data into blocks for dual inlet
                        analyses
orbi_export_data_to_excel
                        Export data to excel
orbi_filter_files       Basic generic data files filter
orbi_filter_flagged_data
                        Filter out flagged data
orbi_filter_isotopocules
                        Filter isotopocules
orbi_filter_isox        Filter isox files
orbi_filter_satellite_peaks
                        Function replaced by
                        'orbi_flag_satellite_peaks()'
orbi_filter_scan_intensity
                        Function replaced by 'orbi_flag_outliers()'
orbi_filter_weak_isotopocules
                        Function replaced by
                        'orbi_flag_weak_isotopocules()'
orbi_find_isox          Find isox files
orbi_find_raw           Find raw files
orbi_flag_outliers      Flag outlier scans
orbi_flag_satellite_peaks
                        Flag minor satellite peaks Flags minor signals
                        for an isotopocule that matches multiple peaks
                        within its exact mass +/- tolerance interval in
                        the same scan. These are often small satellite
                        peaks generated by the Fourier transform.
                        However, if there are satelite peaks of high
                        intensity or very many satellite peaks, it can
                        indicate that the m/z and tolerance setting
                        used for identifying isotopcules need to be
                        revisited. Visualize the flagged satellite
                        peaks with 'orbi_plot_satellite_peaks()'.
orbi_flag_weak_isotopocules
                        Flag weak isotopocules
orbi_get_blocks_info    Summarize blocks info
orbi_get_data           Get data frame from aggregated data
orbi_get_example_files
                        Get available example file(s)
orbi_get_problems       Retrieve parsing problems
orbi_get_settings       Get all isoorbi package settings
orbi_identify_isotopocules
                        Identify isotopocules
orbi_options            Package options
orbi_plot_isotopocule_coverage
                        Isotopocule coverage
orbi_plot_raw_data      Visualize data
orbi_plot_satellite_peaks
                        Visualize satellite peaks
orbi_plot_shot_noise    Make a shot noise plot
orbi_plot_spectra       Plot mass spectra
orbi_read_isox          Read IsoX file
orbi_read_raw           Read RAW files
orbi_segment_blocks     Segment data blocks
orbi_set_settings       Set package settings
orbi_simplify_isox      Simplify IsoX data
orbi_start_aggregator   Dynamic data agreggator
orbi_summarize_results
                        Generate the results table
