R: Insertion Deletion Analysis While Accounting for Possible Missing Data

# Insertion Deletion Analysis While Accounting for Possible Missing Data

## Documentation for package ‘indelmiss’ version 1.0.10

- DESCRIPTION file
- Package NEWS

## Help Pages

indelmiss-package | Insertion deletion analysis while accounting for possible missing data.
gardnerelladata | Gardnerella vaginalis phyletic data (gene family memberships) and phylogenetic tree
indelmiss | Insertion deletion analysis while accounting for possible missing data.
indelrates | Function for estimating indel rates while accounting for missing data.
mycobacteriumdata1 | Mycobacterium data phyletic data (gene family memberships) and tree
mycobacteriumdata2 | Alternate Mycobacterium tree.
plot.indelmiss | Plot parameter estimates from the model fit
plotp | Plot estimates for the parameter that accounts for possible missing data
plotrates | Plot estimates for insertion and deletion rates
plottree | Plot the tree used the branches colored according to the different specified branch groupings (or clades) following unique rates.
print.indelmiss | Print summary information from fit