gardnerelladata         Gardnerella vaginalis phyletic data (gene
                        family memberships) and phylogenetic tree
indelmiss-package       Insertion deletion analysis while accounting
                        for possible missing data.
indelrates              Function for estimating indel rates while
                        accounting for missing data.
mycobacteriumdata1      Mycobacterium data phyletic data (gene family
                        memberships) and tree
mycobacteriumdata2      Alternate Mycobacterium tree.
plot.indelmiss          Plot parameter estimates from the model fit
plotp                   Plot estimates for the parameter that accounts
                        for possible missing data
plotrates               Plot estimates for insertion and deletion rates
plottree                Plot the tree used the branches colored
                        according to the different specified branch
                        groupings (or clades) following unique rates.
print.indelmiss         Print summary information from fit
