R: Analysis of Incubation Data

# Analysis of Incubation Data

## Documentation for package ‘incR’ version 2.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

incR-package | incR: Analysis of animal incubation
incR | incR: Analysis of animal incubation
incRact | Calculation of daily first incubation off-bout and last incubation on-bout
incRatt | Calculation of the percentage of daily time spent in nest
incRbouts | Calculation of the number of daily on- and off-bouts
incRenv | Matching environmental and nest temperatures
incRenv_old | Matching environmental and nest temperatures - Old version
incRplot | Quick visualisation of incubation temperatures, on-bouts and off-bouts
incRprep | Data preparation for incubation analysis in incR
incRscan | Automated scoring of incubation
incRscan_v2 | Scoring of incubation based on a fixed temperature threshold
incRscan_v3 | Scoring of incubation based on combination of dynamic (as in 'incRscan') and fixed temperature thresholds (as in 'incRscan_v2'
incRt | Calculation of temperature average and variance for customised time windows
incR_envdata | An example data set of environmental temperatures to test the use of 'link{incRenv}'.
incR_procdata | An example of incubation temperature time-series after the use of 'incRprep' and 'incRenv'.
incR_rawdata | An example of incubation temperature time-series