Package: imprinting
Type: Package
Title: Calculate Birth Year-Specific Probabilities of Immune Imprinting
        to Influenza
Version: 0.1.1
Authors@R: 
    c(person(given = "Katelyn",
             family = "Gostic",
             role = c("aut"),
             email = "kgostic@uchicago.edu"),
      person(given = "Alex",
             family = "Byrnes",
             role = c("ctb", "cre"),
             email = "abyrnes@uchicago.edu"))
Description: Reconstruct birth-year specific probabilities of immune imprinting to influenza A, using the methods of Gostic et al. (2016) <doi:10.1126/science.aag1322>. Plot, save, or export the calculated probabilities for use in your own research. By default, the package calculates subtype-specific imprinting probabilities, but with user-provided frequency data, it is possible to calculate probabilities for arbitrary kinds of primary exposure to influenza A, including primary vaccination and exposure to specific clades, strains, etc.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: dplyr (>= 1.0.9), tidyr (>= 1.2.0), cowplot (>= 1.0.0),
        ggplot2, tidyselect
Depends: R (>= 3.5.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), devtools
Config/testthat/edition: 3
RoxygenNote: 7.2.2
VignetteBuilder: knitr
URL: https://cobeylab.github.io/imprinting/
BugReports: https://github.com/cobeylab/imprinting/issues
NeedsCompilation: no
Packaged: 2022-12-16 22:31:25 UTC; alex
Author: Katelyn Gostic [aut],
  Alex Byrnes [ctb, cre]
Maintainer: Alex Byrnes <abyrnes@uchicago.edu>
Repository: CRAN
Date/Publication: 2022-12-16 22:50:02 UTC
Built: R 4.6.0; ; 2026-04-26 19:08:56 UTC; unix
