R: Inferring the Topology of Omics Data

# Inferring the Topology of Omics Data

## Documentation for package ‘iTOP’ version 1.0.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

bootstrap.config.matrices | Performing a single bootstrap
compute.config.matrices | Compute configuration matrices
compute.config.matrix | Computes a configuration matrix
inner.product | Inner product similarity.
intersect.samples | Intersect samples between datasets.
jaccard | Jaccard similarity.
permute.config.matrices | Performing a permutation
process.custom.config.matrix | Process a custom configuration matrix.
run.bootstraps | Bootstrapping procedure
run.permutations | Permutations for significance testing
rv.coef | Computes the RV coefficient
rv.conf.interval | Determining a confidence interval for the (partial) RV coefficient
rv.cor.matrix | A correlation matrix of RV coefficients
rv.link.significance | Wrapper function to determine significance in the PC algorithm
rv.pcor | Determining a (partial) RV coefficient
rv.pval | Determining a p-value the (partial) RV coefficient