apply.scaling	apply.scaling
calculate.cis.matrix	calculate.cis.matrix
calculate.integrative.similarity.matrix	calculate.integrative.similarity.matrix
calculate.scaling	calculate.scaling
cluster.patients	cluster.patients
combine.integrative.features	combine.integrative.features
create.autoencoder	create.autoencoder
create.autoencoder.irf.matrix	create.autoencoder.irf.matrix
load.molecular.aberration.data	load.molecular.aberration.data
read.scaling.factors	read.scaling.factors
write.scaling.factors	write.scaling.factors
