basic_branch            Branch-based Core Community Phylogeny Using
                        Thresholds
basic_np                Non-phylogenetic Core Community Phylogeny Using
                        Thresholds
basic_tip               Tip-based Core Community Phylogeny Using
                        Thresholds
coreEdges               Edges of the Tree Included in the Core
                        Community Phylogeny
coreFaithsPD            Faiths PD of the Core Microbiome
coreJaccard             Jaccard Distance Between Core Microbiomes from
                        Two Habitats
corePhyloVenn           Phylogenetic Venn Diagram Comparing Core
                        Microbiomes from Multiple Habitats
coreRichness            Richness of the Core Microbiome
coreTaxa                Taxa Included in the Core Microbiome
coreTree                The Core Community Phylogeny
coreUniFrac             UniFrac Distance Between Core Microbiomes from
                        Two Habitats
coreVenn                Venn Diagram Comparing (Non-Phylogenetic) Core
                        Microbiomes from Multiple Habitats
coreVennTree            Phylogeny with Branches Colored Based on Venn
                        Diagram
ggvenn2                 A modified version of functions from the ggvenn
                        package for plotting phylogenetic venn
                        diagrams.
shade_branch            Branch-based Core Community Phylogeny Using the
                        Shade & Stopnisek (2019) algorithm.
shade_np                Non-phylogenetic Core Community Using the Shade
                        & Stopnisek (2019) algorithm.
shade_tip               Tip-based Core Community Phylogeny Using the
                        Shade & Stopnisek (2019) algorithm.
