# Generated by roxygen2: do not edit by hand

S3method(plot,res2D)
S3method(plot,resdiff)
S3method(plot,resposthoc)
S3method(print,res2D)
S3method(print,resdiff)
S3method(print,resposthoc)
S3method(summary,res2D)
S3method(summary,resdiff)
S3method(summary,resposthoc)
export(AggloClust2D)
export(loadData)
export(performTest)
export(postHoc)
import(reticulate)
importFrom(BiocGenerics,cbind)
importFrom(GenomeInfoDb,`seqlevels<-`)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,match)
importFrom(GenomicRanges,union)
importFrom(InteractionSet,GInteractions)
importFrom(InteractionSet,InteractionSet)
importFrom(InteractionSet,`interactions<-`)
importFrom(InteractionSet,interactions)
importFrom(Matrix,sparseMatrix)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,`metadata<-`)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(adjclust,plotSim)
importFrom(auk,auk_get_awk_path)
importFrom(csaw,asDGEList)
importFrom(csaw,normOffsets)
importFrom(diffHic,enrichedPairs)
importFrom(diffHic,filterPeaks)
importFrom(diffHic,filterTrended)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(limma,squeezeVar)
importFrom(methods,as)
importFrom(reshape2,colsplit)
importFrom(reticulate,py_require)
importFrom(rlang,.data)
importFrom(stats,cophenetic)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,pt)
importFrom(stats,relevel)
importFrom(stats,var)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,str)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(viridis,scale_fill_viridis)
