R: Various Non-Additive Models for Genetic Associations

# Various Non-Additive Models for Genetic Associations

## Documentation for package ‘gnonadd’ version 1.0.3

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

alpha.calc | Genetic variance effects
alpha.cond | Conditional analysis for genetic variance effects
alpha.continuous.cond | variance effect conditioned on continuous variables
alpha.multi.est | Variance parameters
corr.calibration | Calibration for the correlation test
dominance.calc | Genetic dominance effects
dominance_CC.calc | Genetic dominance effects on a case control variable
ellipse.by.gen | Ellipse best fit plot
env_interaction.calc | Variant-Environmental interaction effects
env_interaction_CC.calc | Variant-Environmental interaction effects on a case control variable
expected.variance.effect | Expected variance effect from additive effect
hist_by_gen | Histogram by genotype
interaction.calc | Variant-Variant interaction effects
interaction_CC.calc | Variant-Variant interaction effects on a case control variable
kappa_calc | Genetic correlation effects
pairwise_env_int.calc | Pairwise environmental interaction effects
pairwise_env_int_CC.calc | Pairwise environmental interaction effects for a case control variable
pairwise_int.calc | Pairwise interaction effects
pairwise_int_CC.calc | Pairwise interaction effects for a case control variable
PRS_creator | Creates poligenic risk scores
train_and_impute_PRS | Trains and imputes a poligenic risk score (PRS)
var.adj | Mean and variance effect adjustments.
Var.assoc | Uncertanty association
var.summary | Variance summary statistics
VarGS.plot | Actual variance vs predicted variance plot
Viol.by.gen | Violin plot by genotype