Muller_plot             Draw a Muller plot of frequencies using ggplot2
Muller_pop_plot         Draw a Muller plot of population sizes using
                        ggplot2
add_empty_pop           Modify a dataframe to enable plotting of
                        populations instead of frequencies
add_root_row            Add a row to the edges list to represent the
                        root node (if not already present).
add_start_points        Add rows to a population dataframe to ensure
                        genotype starting points are plotted correctly
adj_matrix_to_tree      Create a tree object of class "phylo" from an
                        adjacency matrix
branch_singles          Add branches of length zero to get rid of
                        single nodes in an adjacency matrix
example_df              Example dataframe
example_edges           Example adjacency matrix
example_pop_df          Example population dataframe
find_start_node         Move to top of adjacency matrix
get_Adj                 Get adjacency list of a tree.
get_Muller_df           Create a data frame from which to create a
                        Muller plot
get_edges               Extract an adjacency matrix from a larger data
                        frame
get_population_df       Extract population data from a larger data
                        frame
move_down               Move to daughter in adjacency matrix
move_right              Move to sibling in adjacency matrix
move_up                 Move to parent in adjacency matrix
path_vector             Record a path through all nodes of an adjacency
                        matrix
path_vector_new         Faster way to record a path through all nodes
                        of an adjacency matrix
reorder_by_vector       Reorder a Muller plot dataframe by a vector
