[.pmx_gpar              Method for subsetting "pmx_gpar" objects
abbrev                  Give the whole abbreviation definition
add_draft               Add draft layer annotation
check_shrink            Performs checks of names in shrink list
distrib                 creates a graphic distribution object
eta_cov                 This creates an ETA covariance matrix which can
                        be used to define the co-relation between the
                        parameters and its shrinkage..
eta_cov_plot            Eta Covariates plots
eta_distribution_plot   Eta distribution plots
eta_pairs               This creates an eta correlation which defines
                        the relationship between parameters
eval_sym_parent_env     Try to evaluate a symbol in the parent frame
                        (on error return the symbol)
getPmxOption            Get ggPMX Option
get_abbrev              Get abbreviation definition by key
get_cats                Get category covariates
get_conts               Get continuous covariates
get_covariates          Get covariates variables
get_data                Get controller data set
get_occ                 Get controller occasional covariates
get_plot                Get plot object
get_plot_config         Get the plot config by name
get_strats              Get extra stratification variables
gtable_remove_grobs     Remove named elements from gtable
individual              This function can be used to obtain individual
                        prediction and compare with observed data and
                        population prediction for each individual
                        separately
input_finegrid          Merge input and fingrid data sets
is.pmx_gpar             Check if an object is a pmx_gpar class
l_left_join             Merge 2 lists
load_config             Obtain the data source config
load_data_set           Load data set
load_source             Load all/or some source data set
n_pages                 Determine the number of pages in a paginated
                        facet plot
param_table             Creates parameter kable
parse_mlxtran           Parse MONOLIX mlxtran file
pk_occ                  Creates pmx controller using monlix data having
                        Occasional variable
pk_pd                   Creates pkpd pmx controller using package
                        internal data
plot_names              Get plot names
plot_pmx                This is a generic plot method that produces all
                        plots by default described in pmx model
                        evaluation guidance.
plot_pmx.distrib        Plot EBE distribution
plot_pmx.eta_cov        This plots an ETA covariance matrix which can
                        be used to define the co-relation between the
                        parameters and its shrinkage
plot_pmx.eta_pairs      Plot random effect correlation plot
plot_pmx.individual     This function can be used to plot individual
                        prediction and compare with observed data and
                        population prediction for each individual
                        separately
plot_pmx.pmx_dens       This function plots EBE versus covariates using
                        qq plots
plot_pmx.pmx_gpar       The ggPMX base plot function
plot_pmx.pmx_param_history
                        S3 method for plots of class pmx_param_history
plot_pmx.pmx_qq         This function plot EBE versus covariates using
                        qq plots
plot_pmx.residual       This function plots residual for each observed
                        value by finding the difference between
                        observed and predicted points. It also fits a
                        distribution to the residual value.
plot_shrink             Plot shrink in eta matric
plots                   Get plots description
pmx                     Create a pmx object
pmxOptions              This function can be used to set ggPMX options
pmx_bloq                Creates BLOQ object attributes
pmx_comp_shrink         Compute Shrinkage
pmx_config              This function can be used to define the pmx
                        configuration used in plots. e.g.
                        Monolix/Nonmem
pmx_copy                Creates a deep copy of the controller
pmx_cov                 Select/Map covariates using human labels
pmx_dens                Creates a density plot object
pmx_endpoint            Creates pmx endpoint object
pmx_filter              filter data in a pmx controller
pmx_get_configs         Get List of built-in configurations
pmx_gpar                Handling pmx Graphical parameters
pmx_list_nm_tables      List NONMEM output tables
pmx_manual_nm_import    Manually define nonmem tables to be imported
pmx_nlmixr              Creates pmx controller from an nlimxr fit
                        object
pmx_nm                  Creates pmx controller from NONMEM model
                        outputs
pmx_plot                Generic pmx plot
pmx_plot_cats           Generic pmx stratified plot
pmx_plot_eta_matrix     Eta matrix plot
pmx_plot_individual     Individual plot
pmx_plot_iwres_dens     IWRES density plot
pmx_plot_saem_convergence
                        SAEM Convergence Plot
pmx_plot_vpc            VPC plot
pmx_qq                  This function creates a qq plot object
pmx_qq_plot             Quantile-quantile plots
pmx_read_nm_files       NONMEM output file import function
pmx_read_nm_model       NONMEM model file parser
pmx_read_nm_tables      NONMEM output table import function
pmx_register_plot       Register plot (Jun2025, Alex: I believe it
                        doesn't work at all)
pmx_report              Generates ggpmX report from a pre-defined
                        template
pmx_report_template     Gets build-in report templates
pmx_settings            Create controller global settings
pmx_shrink              Create shrinkage parameter object
pmx_sim                 Create simulation object
pmx_theme               Define ggPMX theme
pmx_update              Update plot object
pmx_vpc                 Creates vpc object
pmx_vpc_bin             Creates vpc bins
pmx_vpc_ci              Sets vpc confidence interval layer
pmx_vpc_obs             Sets vpc observation layer
pmx_vpc_pi              Sets vpc percentile layer
pmx_vpc_rug             Sets vpc rug layer
print.abbreviation      S3 print abbreviation
print.configs           This function can be used to print
                        configuration of the defined object using S3
                        method.
print.pmxClass          Print pmxClass object
print.pmxConfig         S3 method print pmxConfig object
print.pmx_gpar          Print pmx_gpar object
read_extfile            Reads .ext files generated by NONMEM
read_input              Read Modelling input data
read_mlx_ind_est        Read MONOLIX individual parameters
read_mlx_par_est        Read MONOLIX parameter estimation file
read_mlx_pred           Read MONOLIX model predictions
read_mlx_saem_conv      Read MONOLIX SAEM convergence file
residual                This function create a residual for each
                        observed value and also generates a residual
                        distribution
residual_scatter        Scatter residual plots
set_abbrev              update or add a new abbreviation
set_data                Set a controller data set
set_plot                Create a new plot of the desired type
theophylline            Creates pmx controller using theophylline data
wrap_formula            merge facets formula with new formula
