arrayspecs              Convert landmark data matrix into array (p x k
                        x n)
bilat.symmetry          Analysis of bilateral symmetry
build.template          Deprecated functions in geomorph
combine.subsets         Combine separate landmark configurations
compare.CR              Comparisons of Effect Sizes from Modularity
                        Analyses
compare.ZVrel           Comparisons of Effect Sizes from Overall
                        Integration Analyses
compare.evol.rates      Comparing net rates of shape evolution on
                        phylogenies
compare.multi.evol.rates
                        Comparing net rates of evolution among traits
                        on phylogenies
compare.physignal.z     Comparisons of Phylogenetic Signal Effect Sizes
compare.pls             Comparisons of Effect Sizes from Partial Least
                        Squares
coords.subset           Subset landmark coordinates via a factor
define.links            Define links between landmarks
define.modules          Define modules (landmark partitions)
define.sliders          Select points to "slide" along curves
digit.curves            Calculate semilandmarks along a curve
digit.fixed             This function has been deprecated, as RGL no
                        longer
digitize2d              Digitize 2D landmarks on .jpg files
digitsurface            This function has been deprecated.
editTemplate            This function has been deprecated.
estimate.missing        Estimate locations of missing landmarks
extended.pgls           Extended Phylogenetic ANOVA/regression for
                        Procrustes shape variables
findMeanSpec            Identify specimen closest to the mean of a set
                        of Procrustes shape variables
fixed.angle             Rotate a subset of 2D landmarks to common
                        articulation angle
geomorph-package        Geometric morphometric analyses for 2D/3D data
geomorph.data.frame     Create a data frame with shape data
globalIntegration       Quantify global integration relative to
                        self-similarity
gm.measurement.error    This function is a wrapper for the function
                        measurement.error in RRPP
gm.prcomp               Principal and phylogenetically-aligned
                        components analysis of shape data
gpagen                  Generalized Procrustes analysis of points,
                        curves, and surfaces
gridPar                 Set up parameters for grids, points, and links
                        in plotRefToTarget
hummingbirds            Landmark data from hummingbird bills (includes
                        sliding semilandmarks on curves)
integration.Vrel        Quantify integration in a set of traits
integration.test        Quantify morphological integration between
                        modules
interlmkdist            Calculate linear distances between landmarks
larvalMorph             Head and tail shapes of larval salamanders
lizards                 Dorsal head shape data of lizards
make_ggplot             Convert geomorph plots to ggplot objects
modularity.test         Evaluate the degree of modular signal in shape
                        data
morphol.disparity       Morphological disparity for one or more groups
                        of specimens
mosquito                Landmarks on mosquito wings
mshape                  Estimate mean shape for a set of aligned
                        specimens
na.omit.geomorph.data.frame
                        Handle missing values in rrpp.data.frame
                        objects
phylo.integration       Quantify phylogenetic morphological integration
                        between two or more sets of variables under
                        Brownian motion
phylo.modularity        Evaluate the degree of phylogenetic modular
                        signal in Procrustes shape variables
physignal               Assessing phylogenetic signal in Procrustes
                        shape variables
physignal.eigen         Assessing dimensions of phylogenetic signal in
                        Procrustes shape variables
physignal.z             Assessing phylogenetic signal effect size in
                        Procrustes shape variables
picknplot.shape         Pick points in geomorph scatterplots to
                        visualize shape variation
plethShapeFood          Head shape and food use data from Plethodon
                        salamanders
plethodon               Landmark data from Plethodon salamander heads
plethspecies            Head shape and phylogenetic relationships for
                        several Plethodon salamander species
plot.CR                 Plot Function for geomorph
plot.CR.phylo           Plot Function for geomorph
plot.bilat.symmetry     Plot Function for geomorph
plot.evolrate           Plot Function for geomorph
plot.gm.prcomp          Plot Function for geomorph
plot.gpagen             Plot Function for geomorph
plot.mshape             Plot Function for geomorph
plot.physignal          Plot Function for geomorph
plot.physignal.eigen    Plot Function for geomorph
plot.physignal.z        Plot Function for geomorph
plot.pls                Plot Function for geomorph
plot.procD.lm           Plot Function for geomorph
plotAllSpecimens        Plot landmark coordinates for all specimens
plotAllometry           Plotting to assist visualization of shape-size
                        covariation (allometry)
plotOutliers            Find potential outliers
plotRefToTarget         Plot shape differences between a reference and
                        target specimen
plotspec                Plot 3D specimen, fixed landmarks and surface
                        semilandmarks
print.CR                Print/Summary Function for geomorph
print.CR.phylo          Print/Summary Function for geomorph
print.bilat.symmetry    Print/Summary Function for geomorph
print.combined.set      Print/Summary Function for geomorph
print.compare.CR        Print/Summary Function for geomorph
print.compare.ZVrel     Print/Summary function for geomorph
print.compare.physignal.z
                        Print/Summary Function for geomorph
print.compare.pls       Print/Summary Function for geomorph
print.evolrate          Print/Summary Function for geomorph
print.evolrate1         Print/Summary Function for geomorph
print.geomorphShapes    Print/Summary function for geomorph
print.gm.prcomp         Print/Summary function for geomorph
print.gpagen            Print/Summary Function for geomorph
print.morphol.disparity
                        Print/Summary Function for geomorph
print.physignal         Print/Summary Function for geomorph
print.physignal.eigen   Print/Summary Function for geomorph
print.physignal.z       Print/Summary Function for geomorph
print.pls               Print/Summary Function for geomorph
print.procD.lm          Print/Summary Function for geomorph
procD.lm                Procrustes ANOVA/regression for Procrustes
                        shape variables
procD.pgls              Phylogenetic ANOVA/regression for Procrustes
                        shape variables
pupfish                 Landmarks on pupfish
pupfish.ws              Landmarks on pupfish
ratland                 Landmark data from dataset rat
read.morphologika       Read landmark data from Morphologika file(s)
read.ply                Read mesh data (vertices and faces) from ply
                        files
readland.fcsv           Read landmark data matrix from fcsv file
readland.nts            Read landmark data matrix from nts file
readland.shapes         Read landmark data from a shapes object
                        (StereoMorph)
readland.tps            Read landmark data from tps file
readmulti.nts           Read and combine multiple nts files
readmulti.tps           Read and combine multiple tps files
rotate.coords           Rotate or flip landmark or coordinate
                        configurations
scallopPLY              3D scan of a scallop shell from a .ply file in
                        mesh3d format
scallops                Landmark data from scallop shells
shape.predictor         Shape prediction from numeric predictors
shapeHulls              Update Plots with Convex Hulls for Groups
summary.CR              Print/Summary Function for geomorph
summary.CR.phylo        Print/Summary Function for geomorph
summary.bilat.symmetry
                        Print/Summary Function for geomorph
summary.combined.set    Print/Summary Function for geomorph
summary.compare.CR      Print/Summary Function for geomorph
summary.compare.ZVrel   Print/Summary Function for geomorph
summary.compare.physignal.z
                        Print/Summary Function for geomorph
summary.compare.pls     Print/Summary Function for geomorph
summary.evolrate        Print/Summary Function for geomorph
summary.evolrate1       Print/Summary Function for geomorph
summary.geomorphShapes
                        Print/Summary Function for geomorph
summary.gm.prcomp       Print/Summary Function for geomorph
summary.gpagen          Print/Summary Function for geomorph
summary.morphol.disparity
                        Print/Summary Function for geomorph
summary.physignal       Print/Summary Function for geomorph
summary.physignal.eigen
                        Print/Summary Function for geomorph
summary.physignal.z     Print/Summary Function for geomorph
summary.pls             Print/Summary Function for geomorph
summary.procD.lm        Print/Summary Function for geomorph
two.b.pls               Two-block partial least squares analysis for
                        Procrustes shape variables
two.d.array             Convert (p x k x n) data array into 2D data
                        matrix
warpRefMesh             Creates a mesh3d object warped to the mean
                        shape
warpRefOutline          Creates a 2D outline warped to the mean shape
writeland.tps           Write landmark data to tps file
