genoPlotR-package	genoPlotR-package
annotation	annotation
apply_color_scheme	apply_color_scheme
artemisColors	artemisColors
as.annotation	annotation
as.comparison	comparison
as.dna_seg	dna_seg
as.seg_plot	seg_plot
auto_annotate	auto_annotate
barto	barto
bbone	mauve_bbone
c.dna_seg	c.dna_seg
chrY_subseg	chrY_subseg
comparison	comparison
comparisons	three_genes
dna_seg	dna_seg
dna_segs	three_genes
gene_types	gene_types
genoPlotR	genoPlotR-package
human_nt	human_nt
is.annotation	annotation
is.comparison	comparison
is.dna_seg	dna_seg
is.seg_plot	seg_plot
mauve_bbone	mauve_bbone
middle	middle
plot_gene_map	plot_gene_map
range.annotation	range
range.comparison	range
range.dna_seg	range
read_comparison_from_blast	read_functions
read_comparison_from_tab	read_functions
read_dna_seg_from_embl	read_functions
read_dna_seg_from_fasta	read_functions
read_dna_seg_from_file	read_functions
read_dna_seg_from_genbank	read_functions
read_dna_seg_from_ptt	read_functions
read_dna_seg_from_tab	read_functions
read_functions	read_functions
read_mauve_backbone	read_functions
reverse	reverse
reverse.comparison	reverse
reverse.default	reverse
reverse.dna_seg	reverse
seg_plot	seg_plot
three_genes	three_genes
trim	trim
trim.annotation	trim
trim.comparison	trim
trim.default	trim
trim.dna_seg	trim
trim.seg_plot	trim
