R: Automated Gene Identification for Post-GWAS and QTL Analysis

# Automated Gene Identification for Post-GWAS and QTL Analysis

## Documentation for package ‘geneNR’ version 2.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

geneQTL | Identifies Candidate Genes based on identified Quantitative Trati Loci (QTL) analysis
geneSNP | Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis
geneSNPcustom | Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis
import_hmp | Imports Hapmap genotypic data file
import_vcf | Imports VCF (Variant Call Format) data file
plot_SNP | Plot SNP Distribution on Chromosome Map
plot_summariseSNP | Plot SNP Distribution Across Chromosomes
sample_data_rice | Sample Data
sample_data_rice_qtl | Sample Data
sample_data_wheat | Sample Data
sample_data_wheat_custom | Sample Data
sample_data_wheat_qtl | Sample Data
summariseSNP | Distribution of SNPs Across Chromosomes
summariseSNP_vcf | Distribution of SNPs Across Chromosomes from VCF